Add sensitive mode for polishing

hoelzer / mgnify-lr

Evaluation of long-read support for the MGnify pipeline

GNU General Public License v3.0

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Open hoelzer opened 4 years ago

hoelzer commented 4 years ago

Per default racon and medaka (pilon) are run 1x.

A sensitive mode could do

4x racon 1x medaka 2x pilon

hoelzer commented 4 years ago

Currently default is:

1x racon 1x medaka 2x pilon

(which might be fine for metagenomes)