Missing python in blast.yaml environment

hoelzer / pocp

Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.

GNU General Public License v3.0

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Missing python in blast.yaml environment #9

Closed michoug closed 1 year ago

michoug commented 1 year ago

Hi, Sorry, I lost the error, but basically I ran the pipeline with -profile local,mamba and while running the pocp process, it indicated that python was not present. It seems that the environment file blast.yaml is not installing it Best Greg

hoelzer commented 1 year ago

Should be fixed with https://github.com/hoelzer/pocp/pull/12 bc of the switch to diamond instead of blast and making sure that python is now also in the conda/mamba env.