initial length filter as a optional parameter

hoelzer / virify

A Nextflow implementation of the EBI VIRify pipeline for the detection of viruses from metagenomic assemblies.

GNU General Public License v3.0

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Closed hoelzer closed 4 years ago

hoelzer commented 4 years ago

default is 500 nt atm but it would be nice if the user can adjust this.

hoelzer commented 4 years ago

Implemented this via a --length parameter that has to be given in kb. For example

nextflow run virify.nf --fasta assembly.fasta --length 2

filters all contigs shorter 2000 nt.