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hoelzer / virify

A Nextflow implementation of the EBI VIRify pipeline for the detection of viruses from metagenomic assemblies.
GNU General Public License v3.0
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viruses.taxid #2

Open hoelzer opened 5 years ago

hoelzer commented 5 years ago

I generated a file with all virus taxids from NCBI using etetoolkit.

Now this file can be used to add a module to filter the kaiju output for reads classified as viruses. This can then be added to the unclassified list of ids.