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hoelzer / virify

A Nextflow implementation of the EBI VIRify pipeline for the detection of viruses from metagenomic assemblies.
GNU General Public License v3.0
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Phage annotation: PHANOTATE #6

Closed hoelzer closed 4 years ago

hoelzer commented 4 years ago

Instead or accompanying prodigal we can try PHANOTATE

hoelzer commented 4 years ago

output:

#id:    pos.phage.4
#START  STOP    FRAME   CONTIG  SCORE
3   470 +   pos.phage.4 -112.0497300364002670308665847  
647 1936    +   pos.phage.4 -148458.7930403655168060003720  
1978    3444    +   pos.phage.4 -355437.0584971237854109613581

call:

phanotate.py assembly.fasta
hoelzer commented 4 years ago

We decided to go with prodigal, for now, bc/ we do not know how well prediction of eukaryotic viruses works.