Add the --recover option to the annotate task

hoffmangroup / segway

Application for semi-automated genomic annotation.

http://segway.hoffmanlab.org/

GNU General Public License v2.0

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Add the --recover option to the annotate task #160

Closed EricR86 closed 2 years ago

EricR86 commented 2 years ago

This is to address Issue #159.

Forcing a quit-out during annotate and using the recover option seems to work in a spot-check. It's believed this was removed accidentally during the interface change.

Also common options were now moved to a single source so the text relating to the options are no longer duplicated in code.

EricR86 commented 2 years ago

@michaelmhoffman this is ready for your review