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hoffmangroup / segway

Application for semi-automated genomic annotation.
http://segway.hoffmanlab.org/
GNU General Public License v2.0
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Training windows is empty #164

Closed gaborpapp89 closed 2 years ago

gaborpapp89 commented 2 years ago

Hi!

I created a genomedata archive with only one wig file (and a ref. sequence) and after starting the train phase I received the following error:

’ValueError: Set of training windows is empty’

Is Segway capable of creating a segmentation on only one track file, if so what else could have happened?

Thank You!

EricR86 commented 2 years ago

Hi!

It seems likely either your archive is accidentally empty, or your set of include/exclude coordinates completely excludes your dataset,

If you put in your commands used for both archive creation and training, we can better track down the issue.

gaborpapp89 commented 2 years ago

Hi!

Sorry, it turned out that my archive was corrupted because of the the non-suitable fasta sequence format i provided to genomedata-load. After recreating the archive with corrected format, the training phase went fine.

Thanks