Possible model generation / segment table bug

[EricR86]

Original report (BitBucket issue) by Eric Roberts (Bitbucket: ericr86, GitHub: ericr86).

---

From Google Code Issue #14

Imported Labels: bug, imported, Priority-Medium

From jay.hesselberth on April 13, 2011 10:27:13

I'm trying to run a segmentation where I'd like to specify that all label 0 segments be between 20 and 150, with a ruler of 1 bp. All other segments have no constraints. The seg table I use is:

label len 0 20:150:1 1: 1::1

and I also use --ruler-scale=1.

However, when I run this, the label 0 segments all end up being exactly 150 bases in size, with nothing between 20-150. This seems very strange to me. I've attached a picture of one of the segments, the parameter files, run script and segment table.

Attachment: mmh.tar.gz pic.tiff

Original issue: http://code.google.com/p/segway-genome/issues/detail?id=14

[EricR86]

Original comment by Michael Hoffman (Bitbucket: hoffman, GitHub: michaelmhoffman).

---

• Edited issue description* changed priority from "trivial" to "minor"