I'm trying to run a segmentation where I'd like to specify that all
label 0 segments be between 20 and 150, with a ruler of 1 bp. All
other segments have no constraints. The seg table I use is:
label len
0 20:150:1
1: 1::1
and I also use --ruler-scale=1.
However, when I run this, the label 0 segments all end up being
exactly 150 bases in size, with nothing between 20-150. This seems
very strange to me. I've attached a picture of one of the segments, the parameter files, run script and segment table.
Original report (BitBucket issue) by Eric Roberts (Bitbucket: ericr86, GitHub: ericr86).
From Google Code Issue #14
Imported Labels: bug, imported, Priority-Medium
From jay.hesselberth on April 13, 2011 10:27:13
I'm trying to run a segmentation where I'd like to specify that all label 0 segments be between 20 and 150, with a ruler of 1 bp. All other segments have no constraints. The seg table I use is:
label len 0 20:150:1 1: 1::1
and I also use --ruler-scale=1.
However, when I run this, the label 0 segments all end up being exactly 150 bases in size, with nothing between 20-150. This seems very strange to me. I've attached a picture of one of the segments, the parameter files, run script and segment table.
Attachment: mmh.tar.gz pic.tiff
Original issue: http://code.google.com/p/segway-genome/issues/detail?id=14