Minibatch windows are not seeded

hoffmangroup / segway

Application for semi-automated genomic annotation.

http://segway.hoffmanlab.org/

GNU General Public License v2.0

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Closed EricR86 closed 8 years ago

EricR86 commented 8 years ago

Original report (BitBucket issue) by Rachel Chan (Bitbucket: rcwchan).

The seed for random is not set, so minibatch windows are completely random every time, regardless of the seed segway is given.

EricR86 commented 8 years ago

Original comment by Rachel Chan (Bitbucket: rcwchan).

EricR86 commented 8 years ago

Original comment by Michael Hoffman (Bitbucket: hoffman, GitHub: michaelmhoffman).

Specifically, a seed used by the numpy.random module is set but not one for the Python standard library random module.

EricR86 commented 8 years ago

Original comment by Eric Roberts (Bitbucket: ericr86, GitHub: ericr86).