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hoffmangroup / segway

Application for semi-automated genomic annotation.
http://segway.hoffmanlab.org/
GNU General Public License v2.0
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segway-task should ensure PyTables runs with a single thread #89

Open EricR86 opened 7 years ago

EricR86 commented 7 years ago

Original report (BitBucket issue) by Eric Roberts (Bitbucket: ericr86, GitHub: ericr86).

From: https://bitbucket.org/hoffmanlab/genomedata/issues/25/consider-changing-pytables-default-number

To ensure segway-task runs only a single thread of processing, PyTables parameters tables.parameters.MAX_NUMEXPR_THREADS and tables.parameters.MAX_BLOSC_THREADS should be set to 1

See the Pytables parameters documentation.