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hoffmangroup / segway

Application for semi-automated genomic annotation.
http://segway.hoffmanlab.org/
GNU General Public License v2.0
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Command to clean up intermediate files from Segway runs #94

Open EricR86 opened 8 years ago

EricR86 commented 8 years ago

Original report (BitBucket issue) by Eric Roberts (Bitbucket: ericr86, GitHub: ericr86).

For annotate/identification runs, posterior and viterbi are not necessary after a sucessful run. It's suggested that a separate segway-cleanup command be added to remove such folders.

EricR86 commented 8 years ago

Original comment by Rachel Chan (Bitbucket: rcwchan).

@ericr86 List of folders in email from Michael:

#!python

output posterior viterbi observations *.observations accumulators
EricR86 commented 8 years ago

Original comment by Michael Hoffman (Bitbucket: hoffman, GitHub: michaelmhoffman).

I think posterior and viterbi can just be removed after successful runs, but segway-cleanup would be useful for unsuccessful runs and for removing other things.

EricR86 commented 7 years ago

Original comment by Rachel Chan (Bitbucket: rcwchan).

Note: the cmdline folder should also be removed (all of its contents are technically also logged in the run.sh anyways).