I can use your demo data to generate the test_run.sh script (by the way, although i don't understand what dose all.q mean) by ubismap.py.
But next,
How to use test_run.sh is very difficult for me to use qsub to complete my work in my server base on Ubuntu.
So, how to change the following code generated by test_run.sh to the mode without qsub command (because it's very difficult to install qsub for me, a novice to bioinformatics)
Great job! but i have some problems when i used your software
Here is your pipeline
I can use your demo data to generate the
test_run.sh
script (by the way, although i don't understand what doseall.q
mean) byubismap.py
.But next,
How to use
test_run.sh
is very difficult for me to use qsub to complete my work in my server base on Ubuntu.So, how to change the following code generated by
test_run.sh
to the mode withoutqsub
command (because it's very difficult to installqsub
for me, a novice to bioinformatics)Sorry to bother you.
Best wishes.