This update ensures header_parser is callable regardless of check_header_parser being set to FALSE.
My previous PR bypassed the validation with callable() allowing for non-functions to be passed without raising errors. whoops!
Additionally, I had an issue loading massive FASTA files on an older system and found the cause to be _parse_fasta_all. Which received the entire contents of the file as a list. This update also allows _parse_fasta_all to read arbitrarily large FASTA files without reading the entire contents into memory by passing a file Path object instead of a list of file contents. This had no effect on functionality and should increase file read speeds. Especially on older systems / for larger FASTA files.
This update ensures
header_parseris callable regardless ofcheck_header_parserbeing set toFALSE. My previous PR bypassed the validation withcallable()allowing for non-functions to be passed without raising errors. whoops!Additionally, I had an issue loading massive FASTA files on an older system and found the cause to be
_parse_fasta_all. Which received the entire contents of the file as a list. This update also allows_parse_fasta_allto read arbitrarily large FASTA files without reading the entire contents into memory by passing a file Path object instead of a list of file contents. This had no effect on functionality and should increase file read speeds. Especially on older systems / for larger FASTA files.-EMS