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holgerbrandl / r4intellij

An integration of the R programming language into Intellij IDEA
BSD 2-Clause "Simplified" License
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IndexOutOfBoundsException loading plugin #99

Closed misea closed 6 years ago

misea commented 7 years ago

I get the following exception loading the plugin. I have the plugin enabled, but the project has no R files and I am not using the extension.

IntelliJ build: IntelliJ IDEA 2017.1.2 Build #IU-171.4249.39 Plugin Version: 1.0.5

java.lang.IndexOutOfBoundsException: Index: 1, Size: 1 at java.util.ArrayList.rangeCheck(ArrayList.java:653) at java.util.ArrayList.get(ArrayList.java:429) at com.r4intellij.packages.PackageServiceUtilKt.getInstalledPackageVersions(PackageServiceUtil.kt:146) at com.r4intellij.packages.RSkeletonGenerator.updateSkeletons(RSkeletonGenerator.java:158) at com.r4intellij.packages.RSkeletonGenerator.access$000(RSkeletonGenerator.java:54) at com.r4intellij.packages.RSkeletonGenerator$1.run(RSkeletonGenerator.java:105) at com.intellij.openapi.progress.impl.CoreProgressManager$TaskRunnable.run(CoreProgressManager.java:726) at com.intellij.openapi.progress.impl.CoreProgressManager.a(CoreProgressManager.java:176) at com.intellij.openapi.progress.impl.CoreProgressManager.a(CoreProgressManager.java:556) at com.intellij.openapi.progress.impl.CoreProgressManager.executeProcessUnderProgress(CoreProgressManager.java:501) at com.intellij.openapi.progress.impl.ProgressManagerImpl.executeProcessUnderProgress(ProgressManagerImpl.java:66)

holgerbrandl commented 7 years ago

What is your version of R?

Could you run 

wget https://raw.githubusercontent.com/holgerbrandl/r4intellij/master/r-helpers/package_versions.r
R -f package_versions.r

and attach the output to this ticket?

zagorulkinde commented 7 years ago

Hey! The same issue here. R-3.4.0 version.

holgerbrandl commented 7 years ago

Could you @zagorulkinde run the R bits shown above and attach the output to this ticket. This would enable to progress with the ticket.

zagorulkinde commented 7 years ago

@holgerbrandl

[1] "--- [1] SETTING PATH TO RTOOLS ---" [1] "--- [2] SETTING ENV. VARIABLES TO ORACLE STANDALONE DRIVERS (oracle instant client) ---" [1] "--- [3] SETTING JAVA_HOME ---"

library(tools)

versions = as.data.frame(installed.packages()[, c("Package", "Version")])

with(versions, cat(paste(Package, Version, sep = "\t"), sep = "\n")) base 3.4.0 boot 1.3-19 class 7.3-14 cluster 2.0.6 codetools 0.2-15 colorspace 1.3-2 compiler 3.4.0 data.table 1.10.4 datasets 3.4.0 DBI 0.6-1 dichromat 2.0-0 digest 0.6.12 doParallel 1.0.10 foreach 1.4.3 foreign 0.8-67 ggplot2 2.2.1 graphics 3.4.0 grDevices 3.4.0 grid 3.4.0 gtable 0.2.0 iterators 1.0.8 jsonlite 1.4 KernSmooth 2.23-15 labeling 0.3 lattice 0.20-35 lazyeval 0.2.0 magrittr 1.5 MASS 7.3-47 Matrix 1.2-9 methods 3.4.0 mgcv 1.8-17 microbenchmark 1.4-2.1 munsell 0.4.3 nlme 3.1-131 nnet 7.3-12 parallel 3.4.0 plyr 1.8.4 RColorBrewer 1.1-2 Rcpp 0.12.10 reshape2 1.4.2 rJava 0.9-8 RODBC 1.3-14 ROracle 1.3-1 rpart 4.1-11 SberDBUtil 0.1.0 SberPDVal 4.1.63 SberUtil 1.8.1 scales 0.4.1 spatial 7.3-11 splines 3.4.0 stats 3.4.0 stats4 3.4.0 stringi 1.1.5 stringr 1.2.0 survival 2.41-3 tcltk 3.4.0 tibble 1.3.0 tools 3.4.0 translations 3.4.0 utils 3.4.0 xlsx 0.5.7 xlsxjars 0.6.1

PioBeat commented 7 years ago

Hello, the same issue occurred when starting IntelliJ IDEA Ultimate 2017.1.4 Build #IU-171.4694.23

The output from the command above is attached. package-output.txt

hauntingEcho commented 7 years ago

I also have this issue whenever opening a project, regardless of whether or not it contains R code (although I have no projects which are purely R). R version: 3.4.0 (2017-04-21), installed via homebrew on OSX IntelliJ version: 2017.1.5 build #IU-171.4694.70, built July 4 2017 plugin version 1.0.6

IntelliJ trace: Index: 1, Size: 1 java.lang.IndexOutOfBoundsException: Index: 1, Size: 1 at java.util.ArrayList.rangeCheck(ArrayList.java:653) at java.util.ArrayList.get(ArrayList.java:429) at com.r4intellij.packages.PackageServiceUtilKt.getInstalledPackageVersions(PackageServiceUtil.kt:151) at com.r4intellij.packages.RSkeletonGenerator.updateSkeletons(RSkeletonGenerator.java:158) at com.r4intellij.packages.RSkeletonGenerator.access$000(RSkeletonGenerator.java:54) at com.r4intellij.packages.RSkeletonGenerator$1.run(RSkeletonGenerator.java:105) at com.intellij.openapi.progress.impl.CoreProgressManager$TaskRunnable.run(CoreProgressManager.java:726) at com.intellij.openapi.progress.impl.CoreProgressManager.a(CoreProgressManager.java:176) at com.intellij.openapi.progress.impl.CoreProgressManager.a(CoreProgressManager.java:556) at com.intellij.openapi.progress.impl.CoreProgressManager.executeProcessUnderProgress(CoreProgressManager.java:501) at com.intellij.openapi.progress.impl.ProgressManagerImpl.executeProcessUnderProgress(ProgressManagerImpl.java:66) at com.intellij.openapi.progress.impl.CoreProgressManager.runProcess(CoreProgressManager.java:163) at com.intellij.openapi.progress.impl.ProgressManagerImpl$1.run(ProgressManagerImpl.java:137) at com.intellij.openapi.application.impl.ApplicationImpl$2.run(ApplicationImpl.java:334) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745)

R -f package_versions.r from Terminal: `

R version 3.4.0 (2017-04-21) -- "You Stupid Darkness" Copyright (C) 2017 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin16.5.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details.

Natural language support but running in an English locale

R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R.

library(tools)

versions = as.data.frame(installed.packages()[, c("Package", "Version")])

with(versions, cat(paste(Package, Version, sep = "\t"), sep = "\n")) magrittr 1.5 randomForest 4.6-12 stringi 1.1.5 stringr 1.2.0 base 3.4.0 boot 1.3-19 class 7.3-14 cluster 2.0.6 codetools 0.2-15 compiler 3.4.0 datasets 3.4.0 foreign 0.8-67 graphics 3.4.0 grDevices 3.4.0 grid 3.4.0 KernSmooth 2.23-15 lattice 0.20-35 MASS 7.3-47 Matrix 1.2-9 methods 3.4.0 mgcv 1.8-17 nlme 3.1-131 nnet 7.3-12 parallel 3.4.0 rpart 4.1-11 spatial 7.3-11 splines 3.4.0 stats 3.4.0 stats4 3.4.0 survival 2.41-3 tcltk 3.4.0 tools 3.4.0 utils 3.4.0

`

holgerbrandl commented 7 years ago

Please update to 1.0.7. I did not fix anything because I could not reproduce it. However the error should now include more details that will help to trace it down. So please reattach the extended error output to this ticket if the error happens again.

hauntingEcho commented 7 years ago

updating to R to 3.4.1_1 and the plugin to 1.0.7 removed the error message for me

PioBeat commented 7 years ago

Updating the plugin to 1.0.7 solved the problem. I have R version 3.2.3 installed.

misea commented 7 years ago

Sadly 1.0.7 did not solve this problem for me. Only line number changed

Index: 1, Size: 1
java.lang.IndexOutOfBoundsException: Index: 1, Size: 1
    at java.util.ArrayList.rangeCheck(ArrayList.java:653)
    at java.util.ArrayList.get(ArrayList.java:429)
    at com.r4intellij.packages.PackageServiceUtilKt.getInstalledPackageVersions(PackageServiceUtil.kt:154)
    at com.r4intellij.packages.RSkeletonGenerator.updateSkeletons(RSkeletonGenerator.java:158)
    at com.r4intellij.packages.RSkeletonGenerator.access$000(RSkeletonGenerator.java:54)
    at com.r4intellij.packages.RSkeletonGenerator$1.run(RSkeletonGenerator.java:105)
    at com.intellij.openapi.progress.impl.CoreProgressManager$TaskRunnable.run(CoreProgressManager.java:718)
    at com.intellij.openapi.progress.impl.CoreProgressManager.a(CoreProgressManager.java:170)
    at com.intellij.openapi.progress.impl.CoreProgressManager.a(CoreProgressManager.java:548)
    at com.intellij.openapi.progress.impl.CoreProgressManager.executeProcessUnderProgress(CoreProgressManager.java:493)
    at com.intellij.openapi.progress.impl.ProgressManagerImpl.executeProcessUnderProgress(ProgressManagerImpl.java:94)
    at com.intellij.openapi.progress.impl.CoreProgressManager.runProcess(CoreProgressManager.java:157)
    at com.intellij.openapi.progress.impl.ProgressManagerImpl$2.run(ProgressManagerImpl.java:165)
    at com.intellij.openapi.application.impl.ApplicationImpl$2.run(ApplicationImpl.java:343)
    at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
    at java.lang.Thread.run(Thread.java:745)

Package versions:

assertthat  0.2.0
base    3.3.3
BH  1.62.0-1
bindr   0.1
bindrcpp    0.2
bitops  1.0-6
boot    1.3-18
broom   0.4.2
cellranger  1.1.0
class   7.3-14
cluster 2.0.5
codetools   0.2-15
colorspace  1.3-2
compiler    3.3.3
curl    2.8.9000
datasets    3.3.3
devtools    1.13.2
dichromat   2.0-0
digest  0.6.12
dplyr   0.7.1
forcats 0.2.0
foreign 0.8-67
ggplot2 2.2.1
git2r   0.18.0
glue    1.1.1
graphics    3.3.3
grDevices   3.3.3
grid    3.3.3
gtable  0.2.0
haven   1.1.0
hms 0.3
httr    1.2.1
jsonlite    1.5
KernSmooth  2.23-15
labeling    0.3
lattice 0.20-34
lazyeval    0.2.0
lubridate   1.6.0
magrittr    1.5
MASS    7.3-45
Matrix  1.2-8
memoise 1.1.0
methods 3.3.3
mgcv    1.8-17
mime    0.5
mnormt  1.5-5
modelr  0.1.0
munsell 0.4.3
nlme    3.1-131
nnet    7.3-12
openssl 0.9.6
parallel    3.3.3
pkgconfig   2.0.1
plogr   0.1-1
plyr    1.8.4
psych   1.7.5
purrr   0.2.2.2
R6  2.2.2
RColorBrewer    1.1-2
Rcpp    0.12.11
RCurl   1.95-4.8
readr   1.1.1
readxl  1.0.0
rematch 1.0.1
reshape2    1.4.2
rlang   0.1.1
rpart   4.1-10
rstudioapi  0.6
rvest   0.3.2
scales  0.4.1
selectr 0.3-1
spatial 7.3-11
splines 3.3.3
stats   3.3.3
stats4  3.3.3
stringi 1.1.5
stringr 1.2.0
survival    2.40-1
tcltk   3.3.3
tibble  1.3.3
tidyr   0.6.3
tidyverse   1.1.1
tools   3.3.3
utils   3.3.3
whisker 0.3-2
withr   1.0.2
XML 3.98-1.9
xml2    1.1.1
holgerbrandl commented 7 years ago

I've changed the error handling to make it more sensitive. Please try again once v1.0.8 is released.

holgerbrandl commented 6 years ago

Closed due to inactivity. Feel welcome to reopen the ticket if the problem remains.