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holgerman / HT12ProcessoR

Preprocessing ILLUMINA HT12v4 data intended for project up to thousands of samples
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Vignette not in built package #2

Closed cfbeuchel closed 6 years ago

cfbeuchel commented 6 years ago

When installing the package, the vignette folder is not in the package directory in my local library. This is probably due to the vignette not passing devtools::check(), which fails when trying to build the vignette. Also, building the package via devtools::build() only succeeds when vignettes = F

build_vignettes fails with:

Building HT12ProcessoR vignettes Quitting from lines 134-136 (HT12v4_Preprocessing_Example_Run.Rmd) Fehler: processing vignette 'HT12v4_Preprocessing_Example_Run.Rmd' failed with diagnostics: kann Verbindung nicht öffnen

holgerman commented 6 years ago

May be the building process has problems using the data from Inst/ExtData that is part of the building process?

cfbeuchel commented 6 years ago

I found a passage in Hadley Wickham's RPackages book about this: http://r-pkgs.had.co.nz/data.html -> under Raw Data

It is recommended to use system.file to locate files in inst/extdata

I'll experiment with this on my newly created branch and create a pull-request once it works

cfbeuchel commented 6 years ago

6 implements this and should resolve this issue