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holgerman / HT12ProcessoR

Preprocessing ILLUMINA HT12v4 data intended for project up to thousands of samples
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knitting of vignette fails #3

Closed cfbeuchel closed 6 years ago

cfbeuchel commented 6 years ago

When knittin the HT12v4_Preprocessing_Example_Run.Rmd the process fails with the error message:

Line 307: Error in plot.new() : figure margins too large Calls: ... boxplot -> boxplot.default -> do.call -> bxp -> plot.new -> Execution halted

All chunks run without problem when executed from within the .Rmd file. The error occurs only when knitting the whole file.

holgerman commented 6 years ago

Thanks! Can we try to adapt parameters knitr::opts_chunk$set( fig.width = 12 , fig.height = 8) or something similar?

cfbeuchel commented 6 years ago

OK, I think the problem was the missing setting of fig.width and fig.height in the vignette. After setting the values you provided, the vignette knitted without problem.