holiman / goevmlab

Evm laboratory
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neth (batch mode) OOM after a long time #173

Open holiman opened 3 weeks ago

holiman commented 3 weeks ago

Ran into this crash with the fuzzer:

INFO [10-26|06:48:54.470] Executing                                tests=95,043,214 time=359h0m40.000s    test/s=73.5 "avg steps"=2944.6 global=95,043,214
INFO [10-26|06:48:54.471] Stats gethbatch-0                        execSpeed=27.4ms  longest=25.518789124s    count=35,736,104
INFO [10-26|06:48:54.471] Stats eelsbatch-0                        execSpeed=196.1ms longest=14m21.197711271s count=3,158,778
INFO [10-26|06:48:54.471] Stats nethbatch-0                        execSpeed=27.6ms  longest=22.246265736s    count=42,054,730
INFO [10-26|06:48:54.471] Stats besubatch-0                        execSpeed=26.1ms  longest=15.834618767s    count=44,859,438
INFO [10-26|06:48:54.471] Stats erigonbatch-0                      execSpeed=59.8ms  longest=22.961329371s    count=16,689,147
INFO [10-26|06:48:54.471] Stats nimbus-0                           execSpeed=2.4228s longest=1m1.913436361s   count=536,270
INFO [10-26|06:48:54.471] Stats evmone-0                           execSpeed=21ms    longest=20.040833565s    count=42,968,246
INFO [10-26|06:48:54.471] Stats revm-0                             execSpeed=520ms   longest=5m45.291557981s  count=4,083,719
neth error: invalid character 'O' looking for beginning of value
  | Out of memory.
WARN [10-26|07:18:15.538] Slow test found                          evm=nethbatch-0   time=1m47.587881202s  cmd="/neth/nethtest -x --trace -m" file=/fuzztmp/10573375-mixed-8.json

Somewhere after 42M invocations, the nethermind instance went OOM (the testcase was nothing special). Possibly nethermind in batch mode has some memory leak.

TODO investigate.

file which potentially triggers the leak, 10573375-mixed-8.json:

{
  "10573375-mixed-8": {
    "env": {
      "currentCoinbase": "b94f5374fce5edbc8e2a8697c15331677e6ebf0b",
      "currentDifficulty": "0x200000",
      "currentRandom": "0x0000000000000000000000000000000000000000000000000000000000200000",
      "currentGasLimit": "0x26e1f476fe1e22",
      "currentNumber": "0x1",
      "currentTimestamp": "0x3e8",
      "previousHash": "0x044852b2a670ade5407e78fb2863c51de9fcb96542a07186fe3aeda6bb8a116d",
      "currentBaseFee": "0x10"
    },
    "pre": {
      "0x0000000000000000000000000000000000000000": {
        "code": "0x",
        "storage": {},
        "balance": "0x1",
        "nonce": "0x0"
      },
      "0x0000000000000000000000000000000000000001": {
        "code": "0x",
        "storage": {},
        "balance": "0x1",
        "nonce": "0x0"
      },
      "0x0000000000000000000000000000000000000002": {
        "code": "0x",
        "storage": {},
        "balance": "0x1",
        "nonce": "0x0"
      },
      "0x0000000000000000000000000000000000000003": {
        "code": "0x",
        "storage": {},
        "balance": "0x1",
        "nonce": "0x0"
      },
      "0x0000000000000000000000000000000000000004": {
        "code": "0x",
        "storage": {},
        "balance": "0x1",
        "nonce": "0x0"
      },
      "0x0000000000000000000000000000000000000005": {
        "code": "0x",
        "storage": {},
        "balance": "0x1",
        "nonce": "0x0"
      },
      "0x0000000000000000000000000000000000000006": {
        "code": "0x",
        "storage": {},
        "balance": "0x1",
        "nonce": "0x0"
      },
      "0x0000000000000000000000000000000000000007": {
        "code": "0x",
        "storage": {},
        "balance": "0x1",
        "nonce": "0x0"
      },
      "0x0000000000000000000000000000000000000008": {
        "code": "0x",
        "storage": {},
        "balance": "0x1",
        "nonce": "0x0"
      },
      "0x0000000000000000000000000000000000000009": {
        "code": "0x",
        "storage": {},
        "balance": "0x1",
        "nonce": "0x0"
      },
      "0x000000000000000000000000000000000000000a": {
        "code": "0x",
        "storage": {},
        "balance": "0x1",
        "nonce": "0x0"
      },
      "0x000000000000000000000000000000000000000b": {
        "code": "0x",
        "storage": {},
        "balance": "0x1",
        "nonce": "0x0"
      },
      "0x000000000000000000000000000000000000000c": {
        "code": "0x",
        "storage": {},
        "balance": "0x1",
        "nonce": "0x0"
      },
      "0x000000000000000000000000000000000000000d": {
        "code": "0x",
        "storage": {},
        "balance": "0x1",
        "nonce": "0x0"
      },
      "0x000000000000000000000000000000000000000e": {
        "code": "0x",
        "storage": {},
        "balance": "0x1",
        "nonce": "0x0"
      },
      "0x00000000000000000000000000000000000000f1": {
        "code": 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        "code": "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",
        "storage": {
          "0x0000000000000000000000000000000000000000000000000000000000000000": "0x0000000000000000000000000000000000000000000000000000000000000011",
          "0x0000000000000000000000000000000000000000000000000000000000000002": "0x0000000000000000000000000000000000000000000000000000000000000008",
          "0x0000000000000000000000000000000000000000000000000000000000000003": "0x0000000000000000000000000000000000000000000000000000000000000005"
        },
        "balance": "0x0",
        "nonce": "0x0"
      },
      "0xa94f5374fce5edbc8e2a8697c15331677e6ebf0b": {
        "code": "0x",
        "storage": {},
        "balance": "0xffffffffff",
        "nonce": "0x0"
      }
    },
    "transaction": {
      "gasPrice": "0x10",
      "nonce": "0x0",
      "to": "0x00000000000000000000000000000000000000f1",
      "data": [
        "0x9f08000be94f5478327f274d3bfbbb8600ae77629851d8403c36c1750b21463f41a0910607b10aa821d6bef50f671e35f8b637414171c6bc587e59b2da9d20c6a4bf14430ef91ceb2b526abdf9e5"
      ],
      "gasLimit": [
        "0x7a1200"
      ],
      "value": [
        "0x"
      ],
      "sender": "0xa94f5374fce5edbc8e2a8697c15331677e6ebf0b",
      "secretKey": "0x45a915e4d060149eb4365960e6a7a45f334393093061116b197e3240065ff2d8"
    },
    "out": "0x",
    "post": {
      "Cancun": [
        {
          "hash": "0x0000000000000000000000000000000000000000000000000000000000000000",
          "logs": "0x0000000000000000000000000000000000000000000000000000000000000000",
          "indexes": {
            "data": 0,
            "gas": 0,
            "value": 0
          }
        }
      ]
    }
  }
}
holiman commented 3 weeks ago

Tried to repro it

root@a04949b121fe:/# yes "/fuzztmp/10573375-mixed-8.json" | /neth/nethtest --trace -m -x  2>/dev/null | grep "time" | xargs -L1 bash checkmem.sh nethtest
PID 456170 proc nethtest | Rss: 728460 kB | Pss: 1417619 kB | Shared Clean 7348 kB | Shared Dirty 40 kB | Private 732420 kB
PID 456170 proc nethtest | Rss: 751540 kB | Pss: 1464707 kB | Shared Clean 7348 kB | Shared Dirty 48 kB | Private 754788 kB
PID 456170 proc nethtest | Rss: 775672 kB | Pss: 1512089 kB | Shared Clean 7292 kB | Shared Dirty 32 kB | Private 778992 kB
PID 456170 proc nethtest | Rss: 799328 kB | Pss: 1559395 kB | Shared Clean 7360 kB | Shared Dirty 32 kB | Private 802492 kB
PID 456170 proc nethtest | Rss: 823460 kB | Pss: 1608071 kB | Shared Clean 7364 kB | Shared Dirty 32 kB | Private 826936 kB
PID 456170 proc nethtest | Rss: 847404 kB | Pss: 1658023 kB | Shared Clean 7356 kB | Shared Dirty 32 kB | Private 853024 kB
PID 456170 proc nethtest | Rss: 874820 kB | Pss: 1713117 kB | Shared Clean 7412 kB | Shared Dirty 28 kB | Private 880676 kB

After a couple of minutes:

PID 456170 proc nethtest | Rss: 4451112 kB | Pss: 8861466 kB | Shared Clean 7420 kB | Shared Dirty 28 kB | Private 4443600 kB
PID 456170 proc nethtest | Rss: 4451112 kB | Pss: 8861496 kB | Shared Clean 7436 kB | Shared Dirty 28 kB | Private 4443584 kB

A few minutes later it has gone down a bit again:

PID 456170 proc nethtest | Rss: 4329912 kB | Pss: 8619118 kB | Shared Clean 7540 kB | Shared Dirty 32 kB | Private 4322404 kB
PID 456170 proc nethtest | Rss: 4329912 kB | Pss: 8619137 kB | Shared Clean 7496 kB | Shared Dirty 32 kB | Private 4322384 kB

Seems to stabilize around here

PID 456170 proc nethtest | Rss: 4351724 kB | Pss: 8662759 kB | Shared Clean 7492 kB | Shared Dirty 36 kB | Private 4344196 kB

So yeah, no obvious easily repdocucible leak.

memchecker-script:

#!/bin/bash
if [[ -z "$2" ]]; then
  exit 0
fi
for pid in $(ps -ef | awk '{print $2}'); do
    if [[ -z "$pid" ]]; then
        continue
    fi
    if [[ $pid == "PID" ]]; then
        continue
    fi
    a=$(ps -p $pid -o comm=)
    if [[ $a != "nethtest" ]]; then
        continue
    fi
    if [ -f /proc/$pid/smaps ]; then
        rss=$(awk 'BEGIN {i=0} /^Rss/ {i = i + $2} END {print i}' /proc/$pid/smaps)
        pss=$(awk 'BEGIN {i=0} /^Pss/ {i = i + $2 + 0.5} END {print i}' /proc/$pid/smaps)
        sc=$(awk 'BEGIN {i=0} /^Shared_Clean/ {i = i + $2} END {print i}' /proc/$pid/smaps)
        sd=$(awk 'BEGIN {i=0} /^Shared_Dirty/ {i = i + $2} END {print i}' /proc/$pid/smaps)
        pc=$(awk 'BEGIN {i=0} /^Private_Clean/ {i = i + $2} END {print i}' /proc/$pid/smaps)
        pd=$(awk 'BEGIN {i=0} /^Private_Dirty/ {i = i + $2} END {print i}' /proc/$pid/smaps)
        echo "PID $pid proc $a | Rss: $rss kB | Pss: $pss kB | Shared Clean $sc kB | Shared Dirty $sd kB | Private $(($pd + $pc)) kB"
    fi
done
holiman commented 3 weeks ago

After running for a few hours on a server, nethtest is way larger than any of the other:

    PID USER      PR  NI    VIRT    RES    SHR S  %CPU  %MEM     TIME+ COMMAND                                                                                                                                                                                                               
2537959 root      20   0  537.8g  13.8g  64148 R  53.3   5.5 213:47.46 nethtest                                                                                                                                                                                                              
2537951 root      20   0   53.2g   1.6g  28348 S  54.6   0.6 113:57.21 java                                                                                                                                                                                                                  
2537955 root      20   0   11.0g   1.5g  41004 S 175.2   0.6      6,25 erigon_vm   

cc @MarekM25 @LukaszRozmej any ideas?

LukaszRozmej commented 2 weeks ago

After running for a few hours on a server, nethtest is way larger than any of the other:

    PID USER      PR  NI    VIRT    RES    SHR S  %CPU  %MEM     TIME+ COMMAND                                                                                                                                                                                                               
2537959 root      20   0  537.8g  13.8g  64148 R  53.3   5.5 213:47.46 nethtest                                                                                                                                                                                                              
2537951 root      20   0   53.2g   1.6g  28348 S  54.6   0.6 113:57.21 java                                                                                                                                                                                                                  
2537955 root      20   0   11.0g   1.5g  41004 S 175.2   0.6      6,25 erigon_vm   

cc @MarekM25 @LukaszRozmej any ideas?

We either have to reproduce, or if you have similar situation next time, you could grab us memory dump/snapshot? You can use https://www.jetbrains.com/help/dotmemory/Working_with_dotMemory_Command-Line_Profiler.html

holiman commented 2 weeks ago

A day later (same server), it has gone from 13.8 to 15.5:

    PID USER      PR  NI    VIRT    RES    SHR S  %CPU  %MEM     TIME+ COMMAND                                                                                                                                                                                                               
2537959 root      20   0  538.6g  15.5g  64164 R  50.0   6.2     28,36 nethtest                                                                                                                                                                                                              
2537951 root      20   0   55.0g   1.8g  28348 S  54.6   0.7     15,18 java            

I'll try to dump it.... But, it's going to be a pretty damn large dump..?

holiman commented 2 weeks ago

Meh getting that thing to work inside a docker on a remote server seems not trivial

root@fb2a64aee5d9:/# /fuzztmp/JetBrains.dotMemory.linux-x64.2024.2.7/linux-x64/dotMemory -h 
Unhandled exception. System.Exception: XOpenDisplay failed
   at Avalonia.X11.AvaloniaX11Platform.Initialize(X11PlatformOptions options) in Z:\BuildAgent\work\f216b9e13ea6fd05\Avalonia\src\Avalonia.X11\X11Platform.cs:line 55
   at Avalonia.AvaloniaX11PlatformExtensions.<>c.<UseX11>b__0_0() in Z:\BuildAgent\work\f216b9e13ea6fd05\Avalonia\src\Avalonia.X11\X11Platform.cs:line 354
   at Avalonia.AppBuilder.SetupUnsafe() in Z:\BuildAgent\work\f216b9e13ea6fd05\Avalonia\src\Avalonia.Controls\AppBuilder.cs:line 328
   at Avalonia.AppBuilder.Setup() in Z:\BuildAgent\work\f216b9e13ea6fd05\Avalonia\src\Avalonia.Controls\AppBuilder.cs:line 316
LukaszRozmej commented 2 weeks ago

Meh getting that thing to work inside a docker on a remote server seems not trivial

root@fb2a64aee5d9:/# /fuzztmp/JetBrains.dotMemory.linux-x64.2024.2.7/linux-x64/dotMemory -h 
Unhandled exception. System.Exception: XOpenDisplay failed
   at Avalonia.X11.AvaloniaX11Platform.Initialize(X11PlatformOptions options) in Z:\BuildAgent\work\f216b9e13ea6fd05\Avalonia\src\Avalonia.X11\X11Platform.cs:line 55
   at Avalonia.AvaloniaX11PlatformExtensions.<>c.<UseX11>b__0_0() in Z:\BuildAgent\work\f216b9e13ea6fd05\Avalonia\src\Avalonia.X11\X11Platform.cs:line 354
   at Avalonia.AppBuilder.SetupUnsafe() in Z:\BuildAgent\work\f216b9e13ea6fd05\Avalonia\src\Avalonia.Controls\AppBuilder.cs:line 328
   at Avalonia.AppBuilder.Setup() in Z:\BuildAgent\work\f216b9e13ea6fd05\Avalonia\src\Avalonia.Controls\AppBuilder.cs:line 316

We have a dockerfile with diagnostic tools: https://github.com/NethermindEth/nethermind/blob/master/Dockerfile.diag#L38