Cross-reference our AMR genes with other AMR databases/AMR gene finding algorithms

hollygene / CornellPostdoc

Various scripts I used during my tenure as a Postdoctoral Associate at Cornell University

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Open hollygene opened 3 years ago

hollygene commented 3 years ago

Using:

CARD ResFinder

hollygene commented 3 years ago

How I got to ResFinder results:

sig assoc with resistance genes: Scoary output format -- used geneIDs to get full gene presence absence info
sig assoc with resistance gene presence absence matrix
-- get unique protein sequences for each gene