Open MordicusEtCubitus opened 1 year ago
Your two list of dependencies are identical, I assume this is a mistake?
Anyway, please can you post your full list of dependencies.
Yes it was a mistake, it has been corrected.
Below an example of code with a dask dataframe (in persist mode) that only work with jupyter notebook (not lab) with second configuration
df.hvplot.points(x="longitude"
, y="latitude"
, geo=True
, tiles=True # 'ESRI'
, datashade=True
, rasterize=True
, width=850, height=500
, cmap='fire')
And the working configuration in notebook but not lab:
mamba env export --from-history
name: JBook
channels:
- conda-forge
dependencies:
- python=3.10
- jupytext
- jupyter-book
- jupyterlab
- ipywidgets
- ipykernel
- ca-certificates
- certifi
- openssl
- nodejs
- pandas
- matplotlib
- datashader
- rise
- streamlit
- mypy
With full details:
mamba env export
name: JBook
channels:
- conda-forge
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- accessible-pygments=0.0.4=pyhd8ed1ab_0
- aiofiles=22.1.0=pyhd8ed1ab_0
- aiosqlite=0.18.0=pyhd8ed1ab_0
- alabaster=0.7.13=pyhd8ed1ab_0
- alsa-lib=1.2.8=h166bdaf_0
- altair=5.0.1=pyhd8ed1ab_0
- anyio=3.6.2=pyhd8ed1ab_0
- argon2-cffi=21.3.0=pyhd8ed1ab_0
- argon2-cffi-bindings=21.2.0=py310h5764c6d_3
- arrow-cpp=11.0.0=ha770c72_16_cpu
- astor=0.8.1=pyh9f0ad1d_0
- asttokens=2.2.1=pyhd8ed1ab_0
- attr=2.5.1=h166bdaf_1
- attrs=21.4.0=pyhd8ed1ab_0
- aws-c-auth=0.6.26=h2c7c9e7_6
- aws-c-cal=0.5.26=h71eb795_0
- aws-c-common=0.8.17=hd590300_0
- aws-c-compression=0.2.16=h4f47f36_6
- aws-c-event-stream=0.2.20=h69ce273_6
- aws-c-http=0.7.7=h7b8353a_3
- aws-c-io=0.13.21=h2c99d58_4
- aws-c-mqtt=0.8.6=h3a1964a_15
- aws-c-s3=0.2.8=h0933b68_4
- aws-c-sdkutils=0.1.9=h4f47f36_1
- aws-checksums=0.1.14=h4f47f36_6
- aws-crt-cpp=0.19.9=h85076f6_5
- aws-sdk-cpp=1.10.57=hf40e4db_10
- babel=2.11.0=pyhd8ed1ab_0
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=pyhd8ed1ab_3
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- base58=2.1.1=pyhd8ed1ab_0
- beautifulsoup4=4.11.2=pyha770c72_0
- bleach=6.0.0=pyhd8ed1ab_0
- blinker=1.6.2=pyhd8ed1ab_0
- boto3=1.26.144=pyhd8ed1ab_0
- botocore=1.29.144=pyhd8ed1ab_0
- brotli=1.0.9=h166bdaf_8
- brotli-bin=1.0.9=h166bdaf_8
- brotlipy=0.7.0=py310h5764c6d_1005
- bzip2=1.0.8=h7f98852_4
- c-ares=1.19.1=hd590300_0
- ca-certificates=2023.5.7=hbcca054_0
- cachetools=5.3.0=pyhd8ed1ab_0
- cairo=1.16.0=ha61ee94_1014
- certifi=2023.5.7=pyhd8ed1ab_0
- cffi=1.15.1=py310h255011f_3
- charset-normalizer=2.1.1=pyhd8ed1ab_0
- click=8.0.4=py310hff52083_0
- click-completion=0.5.2=py310hff52083_5
- click-log=0.4.0=pyhd8ed1ab_0
- cloudpickle=2.2.1=pyhd8ed1ab_0
- colorama=0.4.6=pyhd8ed1ab_0
- colorcet=3.0.1=pyhd8ed1ab_0
- comm=0.1.2=pyhd8ed1ab_0
- contourpy=1.0.7=py310hdf3cbec_0
- cryptography=39.0.1=py310h34c0648_0
- cycler=0.11.0=pyhd8ed1ab_0
- dask-core=2023.3.2=pyhd8ed1ab_0
- dataclasses=0.8=pyhc8e2a94_3
- datashader=0.14.4=pyh1a96a4e_0
- datashape=0.5.4=py_1
- dbus=1.13.6=h5008d03_3
- debugpy=1.6.6=py310heca2aa9_0
- decorator=5.1.1=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- docutils=0.17.1=py310hff52083_3
- entrypoints=0.4=pyhd8ed1ab_0
- executing=1.2.0=pyhd8ed1ab_0
- expat=2.5.0=hcb278e6_1
- fftw=3.3.10=nompi_hf0379b8_106
- flit-core=3.8.0=pyhd8ed1ab_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.39.3=py310h1fa729e_0
- freetype=2.12.1=hca18f0e_1
- fsspec=2023.3.0=pyhd8ed1ab_1
- gettext=0.21.1=h27087fc_0
- gflags=2.2.2=he1b5a44_1004
- gitdb=4.0.10=pyhd8ed1ab_0
- gitpython=3.1.30=pyhd8ed1ab_0
- glib=2.74.1=h6239696_1
- glib-tools=2.74.1=h6239696_1
- glog=0.6.0=h6f12383_0
- graphite2=1.3.13=h58526e2_1001
- greenlet=2.0.2=py310heca2aa9_0
- gst-plugins-base=1.22.0=h4243ec0_2
- gstreamer=1.22.0=h25f0c4b_2
- gstreamer-orc=0.4.33=h166bdaf_0
- harfbuzz=6.0.0=h8e241bc_0
- icu=70.1=h27087fc_0
- idna=3.4=pyhd8ed1ab_0
- imagesize=1.4.1=pyhd8ed1ab_0
- importlib-metadata=6.0.0=pyha770c72_0
- importlib_metadata=6.0.0=hd8ed1ab_0
- importlib_resources=5.10.2=pyhd8ed1ab_0
- ipykernel=6.21.2=pyh210e3f2_0
- ipython=8.10.0=pyh41d4057_0
- ipython_genutils=0.2.0=py_1
- ipywidgets=7.7.3=pyhd8ed1ab_0
- jack=1.9.22=h11f4161_0
- jedi=0.18.2=pyhd8ed1ab_0
- jinja2=3.1.2=pyhd8ed1ab_1
- jmespath=1.0.1=pyhd8ed1ab_0
- json5=0.9.5=pyh9f0ad1d_0
- jsonschema=4.17.3=pyhd8ed1ab_0
- jupyter-book=0.15.1=pyhd8ed1ab_0
- jupyter-cache=0.6.1=pyhd8ed1ab_0
- jupyter-server-mathjax=0.2.6=pyh5bfe37b_1
- jupyter-sphinx=0.3.2=pyhd8ed1ab_1
- jupyter_client=8.0.3=pyhd8ed1ab_0
- jupyter_core=5.2.0=py310hff52083_0
- jupyter_events=0.5.0=pyhd8ed1ab_1
- jupyter_server=2.3.0=pyhd8ed1ab_0
- jupyter_server_fileid=0.6.0=pyhd8ed1ab_0
- jupyter_server_terminals=0.4.4=pyhd8ed1ab_1
- jupyter_server_ydoc=0.6.1=pyhd8ed1ab_0
- jupyter_ydoc=0.2.2=pyhd8ed1ab_0
- jupyterlab=3.6.1=pyhd8ed1ab_0
- jupyterlab_pygments=0.2.2=pyhd8ed1ab_0
- jupyterlab_server=2.19.0=pyhd8ed1ab_0
- jupyterlab_widgets=1.1.2=pyhd8ed1ab_0
- jupytext=1.14.4=pyhcff175f_0
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.4=py310hbf28c38_1
- krb5=1.20.1=h81ceb04_0
- lame=3.100=h166bdaf_1003
- latexcodec=2.0.1=pyh9f0ad1d_0
- lcms2=2.15=haa2dc70_1
- ld_impl_linux-64=2.40=h41732ed_0
- lerc=4.0.0=h27087fc_0
- libabseil=20230125.0=cxx17_hcb278e6_1
- libarrow=11.0.0=h8dc56a0_16_cpu
- libblas=3.9.0=16_linux64_openblas
- libbrotlicommon=1.0.9=h166bdaf_8
- libbrotlidec=1.0.9=h166bdaf_8
- libbrotlienc=1.0.9=h166bdaf_8
- libcap=2.67=he9d0100_0
- libcblas=3.9.0=16_linux64_openblas
- libclang=15.0.7=default_had23c3d_1
- libclang13=15.0.7=default_h3e3d535_1
- libcrc32c=1.1.2=h9c3ff4c_0
- libcups=2.3.3=h36d4200_3
- libcurl=8.1.2=h409715c_0
- libdb=6.2.32=h9c3ff4c_0
- libdeflate=1.18=h0b41bf4_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libevent=2.1.10=h28343ad_4
- libexpat=2.5.0=hcb278e6_1
- libffi=3.4.2=h7f98852_5
- libflac=1.4.2=h27087fc_0
- libgcc-ng=12.2.0=h65d4601_19
- libgcrypt=1.10.1=h166bdaf_0
- libgfortran-ng=12.2.0=h69a702a_19
- libgfortran5=12.2.0=h337968e_19
- libglib=2.74.1=h606061b_1
- libgomp=12.2.0=h65d4601_19
- libgoogle-cloud=2.8.0=hac9eb74_2
- libgpg-error=1.46=h620e276_0
- libgrpc=1.54.2=hcf146ea_0
- libiconv=1.17=h166bdaf_0
- libjpeg-turbo=2.1.5.1=h0b41bf4_0
- liblapack=3.9.0=16_linux64_openblas
- libllvm11=11.1.0=he0ac6c6_5
- libllvm15=15.0.7=hadd5161_1
- libnghttp2=1.52.0=h61bc06f_0
- libnsl=2.0.0=h7f98852_0
- libnuma=2.0.16=h0b41bf4_1
- libogg=1.3.4=h7f98852_1
- libopenblas=0.3.21=pthreads_h78a6416_3
- libopus=1.3.1=h7f98852_1
- libpng=1.6.39=h753d276_0
- libpq=15.2=hb675445_0
- libprotobuf=3.21.12=h3eb15da_0
- libsndfile=1.2.0=hb75c966_0
- libsodium=1.0.18=h36c2ea0_1
- libsqlite=3.40.0=h753d276_0
- libssh2=1.10.0=hf14f497_3
- libstdcxx-ng=12.2.0=h46fd767_19
- libsystemd0=253=h8c4010b_1
- libthrift=0.18.1=h5e4af38_0
- libtiff=4.5.0=ha587672_6
- libtool=2.4.7=h27087fc_0
- libudev1=253=h0b41bf4_1
- libutf8proc=2.8.0=h166bdaf_0
- libuuid=2.32.1=h7f98852_1000
- libuv=1.44.2=h166bdaf_0
- libvorbis=1.3.7=h9c3ff4c_0
- libwebp-base=1.3.0=h0b41bf4_0
- libxcb=1.13=h7f98852_1004
- libxkbcommon=1.5.0=h79f4944_1
- libxml2=2.10.3=h7463322_0
- libxslt=1.1.37=h873f0b0_0
- libzlib=1.2.13=h166bdaf_4
- linkify-it-py=2.0.0=pyhd8ed1ab_0
- llvmlite=0.39.1=py310h58363a5_1
- locket=1.0.0=pyhd8ed1ab_0
- lxml=4.9.2=py310hbdc0903_0
- lz4-c=1.9.4=hcb278e6_0
- markdown-it-py=1.1.0=pyhd8ed1ab_0
- markupsafe=2.1.2=py310h1fa729e_0
- matplotlib=3.7.1=py310hff52083_0
- matplotlib-base=3.7.1=py310he60537e_0
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- mdit-py-plugins=0.4.0=pyhd8ed1ab_0
- mistune=0.8.4=pyh1a96a4e_1006
- mpg123=1.31.3=hcb278e6_0
- multipledispatch=0.6.0=py_0
- munkres=1.1.4=pyh9f0ad1d_0
- mypy=1.4.1=py310h2372a71_0
- mypy_extensions=1.0.0=pyha770c72_0
- mysql-common=8.0.32=ha901b37_1
- mysql-libs=8.0.32=hd7da12d_1
- myst-nb=0.17.2=pyhd8ed1ab_0
- myst-parser=0.18.1=pyhd8ed1ab_0
- nbclassic=0.5.1=pyhd8ed1ab_0
- nbclient=0.5.13=pyhd8ed1ab_0
- nbconvert=6.5.3=pyhd8ed1ab_0
- nbconvert-core=6.5.3=pyhd8ed1ab_0
- nbconvert-pandoc=6.5.3=pyhd8ed1ab_0
- nbdime=3.1.1=pyhd8ed1ab_0
- nbformat=5.7.3=pyhd8ed1ab_0
- ncurses=6.3=h27087fc_1
- nest-asyncio=1.5.6=pyhd8ed1ab_0
- nodejs=18.12.1=h8839609_0
- notebook=6.5.2=pyha770c72_1
- notebook-shim=0.2.2=pyhd8ed1ab_0
- nspr=4.35=h27087fc_0
- nss=3.89=he45b914_0
- numba=0.56.4=py310ha5257ce_0
- numpy=1.23.5=py310h53a5b5f_0
- openjpeg=2.5.0=hfec8fc6_2
- openssl=3.1.1=hd590300_1
- orc=1.8.3=hfdbbad2_0
- packaging=23.0=pyhd8ed1ab_0
- pandas=1.5.3=py310h9b08913_1
- pandoc=2.19.2=h32600fe_1
- pandocfilters=1.5.0=pyhd8ed1ab_0
- param=1.13.0=pyh1a96a4e_0
- parquet-cpp=1.5.1=2
- parso=0.8.3=pyhd8ed1ab_0
- partd=1.3.0=pyhd8ed1ab_0
- pcre2=10.40=hc3806b6_0
- pexpect=4.8.0=pyh1a96a4e_2
- pickleshare=0.7.5=py_1003
- pillow=9.4.0=py310h065c6d2_2
- pip=23.0=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
- platformdirs=3.0.0=pyhd8ed1ab_0
- ply=3.11=py_1
- pooch=1.7.0=pyha770c72_3
- prometheus_client=0.16.0=pyhd8ed1ab_0
- prompt-toolkit=3.0.36=pyha770c72_0
- protobuf=4.21.12=py310heca2aa9_0
- psutil=5.9.4=py310h5764c6d_0
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pulseaudio=16.1=hcb278e6_3
- pulseaudio-client=16.1=h5195f5e_3
- pulseaudio-daemon=16.1=ha8d29e2_3
- pure_eval=0.2.2=pyhd8ed1ab_0
- pyarrow=11.0.0=py310he6bfd7f_16_cpu
- pybtex=0.24.0=pyhd8ed1ab_2
- pybtex-docutils=1.0.2=py310hff52083_2
- pycparser=2.21=pyhd8ed1ab_0
- pyct=0.4.6=py_0
- pyct-core=0.4.6=py_0
- pydata-sphinx-theme=0.13.3=pyhd8ed1ab_0
- pydeck=0.8.0=pyhd8ed1ab_0
- pygments=2.14.0=pyhd8ed1ab_0
- pympler=1.0.1=pyhd8ed1ab_0
- pyopenssl=23.0.0=pyhd8ed1ab_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pyqt=5.15.7=py310hab646b1_3
- pyqt5-sip=12.11.0=py310heca2aa9_3
- pyrsistent=0.19.3=py310h1fa729e_0
- pysocks=1.7.1=pyha2e5f31_6
- python=3.10.9=he550d4f_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-fastjsonschema=2.16.2=pyhd8ed1ab_0
- python-json-logger=2.0.6=pyhd8ed1ab_0
- python_abi=3.10=3_cp310
- pytz=2022.7.1=pyhd8ed1ab_0
- pyyaml=6.0=py310h5764c6d_5
- pyzmq=25.0.0=py310h059b190_0
- qt-main=5.15.8=h67dfc38_7
- rdma-core=28.9=h59595ed_1
- re2=2023.02.02=hcb278e6_0
- readline=8.1.2=h0f457ee_0
- requests=2.28.2=pyhd8ed1ab_0
- rfc3339-validator=0.1.4=pyhd8ed1ab_0
- rfc3986-validator=0.1.1=pyh9f0ad1d_0
- rise=5.7.1=py310hff52083_2
- s2n=1.3.44=h06160fa_0
- s3transfer=0.6.1=pyhd8ed1ab_0
- scipy=1.10.1=py310h8deb116_0
- semver=3.0.0=pyhd8ed1ab_0
- send2trash=1.8.0=pyhd8ed1ab_0
- setuptools=67.3.2=pyhd8ed1ab_0
- shellingham=1.5.1=pyhd8ed1ab_0
- sip=6.7.7=py310heca2aa9_0
- six=1.16.0=pyh6c4a22f_0
- smmap=3.0.5=pyh44b312d_0
- snappy=1.1.10=h9fff704_0
- sniffio=1.3.0=pyhd8ed1ab_0
- snowballstemmer=2.2.0=pyhd8ed1ab_0
- soupsieve=2.3.2.post1=pyhd8ed1ab_0
- sphinx=4.5.0=pyh6c4a22f_0
- sphinx-book-theme=1.0.1=pyhd8ed1ab_0
- sphinx-comments=0.0.3=pyh9f0ad1d_0
- sphinx-copybutton=0.5.0=pyhd8ed1ab_0
- sphinx-design=0.3.0=pyhd8ed1ab_0
- sphinx-external-toc=0.3.1=pyhd8ed1ab_0
- sphinx-jupyterbook-latex=0.5.2=pyhd8ed1ab_0
- sphinx-multitoc-numbering=0.1.3=pyhd8ed1ab_0
- sphinx-thebe=0.2.1=pyhd8ed1ab_0
- sphinx-togglebutton=0.3.2=pyhd8ed1ab_0
- sphinxcontrib-applehelp=1.0.4=pyhd8ed1ab_0
- sphinxcontrib-bibtex=2.5.0=pyhd8ed1ab_0
- sphinxcontrib-devhelp=1.0.2=py_0
- sphinxcontrib-htmlhelp=2.0.1=pyhd8ed1ab_0
- sphinxcontrib-jsmath=1.0.1=py_0
- sphinxcontrib-qthelp=1.0.3=py_0
- sphinxcontrib-serializinghtml=1.1.5=pyhd8ed1ab_2
- sqlalchemy=1.4.46=py310h1fa729e_0
- stack_data=0.6.2=pyhd8ed1ab_0
- streamlit=1.9.0=pyhd8ed1ab_0
- tabulate=0.9.0=pyhd8ed1ab_1
- terminado=0.17.1=pyh41d4057_0
- tinycss2=1.2.1=pyhd8ed1ab_0
- tk=8.6.12=h27826a3_0
- toml=0.10.2=pyhd8ed1ab_0
- tomli=2.0.1=pyhd8ed1ab_0
- toolz=0.12.0=pyhd8ed1ab_0
- tornado=6.2=py310h5764c6d_1
- traitlets=5.9.0=pyhd8ed1ab_0
- typing-extensions=4.4.0=hd8ed1ab_0
- typing_extensions=4.4.0=pyha770c72_0
- tzdata=2022g=h191b570_0
- tzlocal=5.0.1=py310hff52083_0
- uc-micro-py=1.0.1=pyhd8ed1ab_0
- ucx=1.14.1=hf587318_2
- unicodedata2=15.0.0=py310h5764c6d_0
- urllib3=1.26.14=pyhd8ed1ab_0
- validators=0.20.0=pyhd8ed1ab_0
- watchdog=3.0.0=py310hff52083_0
- wcwidth=0.2.6=pyhd8ed1ab_0
- webencodings=0.5.1=py_1
- websocket-client=1.5.1=pyhd8ed1ab_0
- wheel=0.38.4=pyhd8ed1ab_0
- widgetsnbextension=3.6.1=pyha770c72_0
- xarray=2023.3.0=pyhd8ed1ab_0
- xcb-util=0.4.0=h516909a_0
- xcb-util-image=0.4.0=h166bdaf_0
- xcb-util-keysyms=0.4.0=h516909a_0
- xcb-util-renderutil=0.3.9=h166bdaf_0
- xcb-util-wm=0.4.1=h516909a_0
- xkeyboard-config=2.38=h0b41bf4_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.8.4=h0b41bf4_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xf86vidmodeproto=2.3.1=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.6=h166bdaf_0
- y-py=0.5.5=py310h4426083_2
- yaml=0.2.5=h7f98852_2
- ypy-websocket=0.8.2=pyhd8ed1ab_0
- zeromq=4.3.4=h9c3ff4c_1
- zipp=3.13.0=pyhd8ed1ab_0
- zlib=1.2.13=h166bdaf_4
- zstd=1.5.2=h3eb15da_6
- pip:
- arrow==1.2.3
- fqdn==1.5.1
- isoduration==20.11.0
- jsonpointer==2.3
- jupytercards==2.1.3
- jupyterlab-myst==1.0.1
- jupyterquiz==2.0.7
- uri-template==1.2.0
- webcolors==1.12
prefix: /home/user/mambaforge/envs/JBook
@MordicusEtCubitus I am going to move this issue over to the hvPlot repository. I know you are using the example from the Datashader docs, but Datashader itself is just producing images under hvPlot's control and is not aware of whether the output goes to Jupyter or not.
I do know that there have been problems recently with various HoloViz projects and JupyterLab 3/4, but I don't know where this can be fixed.
Same here, when using datashader=True
, upon zoom, the line is not redrawn.
Since a few months I'm no more able to run properly Datashader introduction notebook: https://datashader.org/getting_started/Introduction.html
Once the first display is done, datashader plot is no more updated in jupyterlab or jupyter notebook Here is my running version with tljh:
I still get the notebook version running properly (but not lab) in this configuration:
Here is how I create my Python environment:
I've also the issue with environments created by rapidsai or any other.
If you can help, I'll will be very pleased ! Thanks in advance !
Here is another notebook example with same issue. DatashaderIssue.ipynb.zip