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holzschu / Carnets

Carnets is a stand-alone Jupyter notebook server and client. Edit your notebooks on the go, even where there is no network.
https://holzschu.github.io/Carnets_Jupyter/
BSD 3-Clause "New" or "Revised" License
566 stars 34 forks source link

Can't install H5py #121

Open rsadri opened 4 years ago

rsadri commented 4 years ago

When I try to install H5py using PIP command, it copies all the files but fails to find pkg-config

holzschu commented 4 years ago

Hi, h5py is merely a package that makes python call the hdf5 binary. The installer is probably using pkg-config to find the location of the hdf5 binary, which doesn’t exist.

I’d have to install hdf5 and h5py at the app level.

rsadri commented 4 years ago

Thank you,

On Aug 25, 2020, at 1:11 AM, Nicolas Holzschuch notifications@github.com wrote:

Hi, h5py is merely a package that makes python call the hdf5 binary. The installer is probably using pkg-config to find the location of the hdf5 binary, which doesn’t exist.

I’d have to install hdf5 and h5py at the app level.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/holzschu/Carnets/issues/121#issuecomment-679875098, or unsubscribe https://github.com/notifications/unsubscribe-auth/ACH3RLBBYR7K7IA2SHM62MTSCNW27ANCNFSM4QKFA7DA.

THMSB79 commented 1 year ago

Hi I have the same problem and I don’t know how to hdf5 and h5py at the app level. Can you help me?

Hi, h5py is merely a package that makes python call the hdf5 binary. The installer is probably using pkg-config to find the location of the hdf5 binary, which doesn’t exist.

I’d have to install hdf5 and h5py at the app level.

holzschu commented 1 year ago

A consequence of Apple security policy is that users cannot install binaries on their own, only the developer can (that's what I mean by "at the app level": I would have to do it, for all users of the app).

THMSB79 commented 1 year ago

So do you have any plan to install it?😅 or is there any other way to use h5py library in cornets?

ndrory commented 1 year ago

Another vote to include hdf5 file support in Carnets.

andr-line commented 1 month ago

Any updates? I would really like hdf5 file support.

jakirkham commented 1 month ago

For just reading HDF5 files, there is a pure Python implementation of an HDF5 reader (not feature complete) called pyfive