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honzee
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RNAseqCNV
R package for large-scale CNV analysis from RNA-seq
MIT License
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ALL training cohort
#26
nerea-bilbao
opened
5 months ago
1
An unresolved error
#25
jieyu-He
opened
7 months ago
4
What GATK parameters to use to generate VCF?
#24
NadineWolgast
closed
7 months ago
2
totalRNA library results variant filtering
#23
nerea-bilbao
opened
1 year ago
3
Incorrect vcf file format. No allele depth (AD) in FORMAT column
#22
JAYRJPT
closed
1 year ago
2
Error in mutate( ), snvOrd must be size 0 or 1, not 2.
#21
anashank
opened
1 year ago
3
Format for gene level counts
#20
anashank
closed
1 year ago
2
Hg38 VCF file error: Error in UseMethod("select") : no applicable method for 'select' applied to an object of class "NULL"
#19
nerea-bilbao
closed
1 year ago
6
Error in data.table::setnames: 'old' is length 7 but 'new' is length 2
#18
deb0612
opened
1 year ago
6
Unable to run tutorial samples
#17
nerea-bilbao
opened
1 year ago
1
Problem while computing sd_dipl
#16
yonizephyr
closed
1 year ago
8
Update README.md
#15
ojziff
closed
2 years ago
1
Code confusion of filter chr arm
#14
zhangguangsi
closed
1 year ago
3
counts matrix should be numeric, currently it has mode: logical
#13
xiucz
closed
2 years ago
4
CNV prediction failed
#12
Kaddea
opened
2 years ago
3
Error with dplyr/mutate
#11
Kaddea
closed
2 years ago
5
Error: object 'genome_version' not found
#10
JAYRJPT
closed
2 years ago
1
Error in DESeqDataSet: counts matrix should be numeric, currently it has mode: logical
#9
deb0612
closed
2 years ago
10
Figure interpretation
#8
honzee
closed
2 years ago
9
Hg38 built for RNAseqCNV
#7
JAYRJPT
closed
3 years ago
14
SNP filtering based on hg38 genome assembly. Non-matching genome assemblies causing missing MAF grapgs.
#6
honzee
closed
3 years ago
7
Warning: Error in : Problem with `filter()` input `..1`.
#5
deppworld
closed
4 years ago
5
Error: Can't subset elements that don't exist. x Location 1 doesn't exist. ℹ There are only 0 elements.
#4
JAYRJPT
closed
4 years ago
14
link RNAseq count to CNV
#3
hellocita
closed
4 years ago
1
Warning messages: 1: In colnames(count_norm)[2:length(count_norm)] <- paste0("control_", : number of items to replace is not a multiple of replacement length 2: Removed 2 rows containing missing values (geom_label).
#2
honzee
closed
4 years ago
4
Warning: Error in fread: is.logical(header) && length(header) == 1L is not TRUE
#1
JAYRJPT
closed
4 years ago
20