honzee RNAseqCNV issues

honzee / RNAseqCNV

R package for large-scale CNV analysis from RNA-seq

MIT License

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issues

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ALL training cohort

#26 nerea-bilbao opened 5 months ago
1
An unresolved error

#25 jieyu-He opened 7 months ago
4
What GATK parameters to use to generate VCF?

#24 NadineWolgast closed 7 months ago
2
totalRNA library results variant filtering

#23 nerea-bilbao opened 1 year ago
3
Incorrect vcf file format. No allele depth (AD) in FORMAT column

#22 JAYRJPT closed 1 year ago
2
Error in mutate( ), snvOrd must be size 0 or 1, not 2.

#21 anashank opened 1 year ago
3
Format for gene level counts

#20 anashank closed 1 year ago
2
Hg38 VCF file error: Error in UseMethod("select") : no applicable method for 'select' applied to an object of class "NULL"

#19 nerea-bilbao closed 1 year ago
6
Error in data.table::setnames: 'old' is length 7 but 'new' is length 2

#18 deb0612 opened 1 year ago
6
Unable to run tutorial samples

#17 nerea-bilbao opened 1 year ago
1
Problem while computing sd_dipl

#16 yonizephyr closed 1 year ago
8
Update README.md

#15 ojziff closed 2 years ago
1
Code confusion of filter chr arm

#14 zhangguangsi closed 1 year ago
3
counts matrix should be numeric, currently it has mode: logical

#13 xiucz closed 2 years ago
4
CNV prediction failed

#12 Kaddea opened 2 years ago
3
Error with dplyr/mutate

#11 Kaddea closed 2 years ago
5
Error: object 'genome_version' not found

#10 JAYRJPT closed 2 years ago
1
Error in DESeqDataSet: counts matrix should be numeric, currently it has mode: logical

#9 deb0612 closed 2 years ago
10
Figure interpretation

#8 honzee closed 2 years ago
9
Hg38 built for RNAseqCNV

#7 JAYRJPT closed 3 years ago
14
SNP filtering based on hg38 genome assembly. Non-matching genome assemblies causing missing MAF grapgs.

#6 honzee closed 3 years ago
7
Warning: Error in : Problem with `filter()` input `..1`.

#5 deppworld closed 4 years ago
5
Error: Can't subset elements that don't exist. x Location 1 doesn't exist. ℹ There are only 0 elements.

#4 JAYRJPT closed 4 years ago
14
link RNAseq count to CNV

#3 hellocita closed 4 years ago
1
Warning messages: 1: In colnames(count_norm)[2:length(count_norm)] <- paste0("control_", : number of items to replace is not a multiple of replacement length 2: Removed 2 rows containing missing values (geom_label).

#2 honzee closed 4 years ago
4
Warning: Error in fread: is.logical(header) && length(header) == 1L is not TRUE

#1 JAYRJPT closed 4 years ago
20