hoogenboom-group / interactive-render-workflow

Interactive workflow for aligning volume electron microscopy datasets.
GNU General Public License v3.0
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Add `postcorrect` notebook #1

Closed arentkievits closed 10 months ago

arentkievits commented 12 months ago

We can use the postcorrector.py code in the scripted_render_pipeline repo to do interactive optimization of the post-correction parameters (artifact detection). Based on existing notebook from Ryan. The script can then use the optimized post-correction parameters for the full stack.

arentkievits commented 10 months ago

This is relevant because some datasets have ROAs that partly cover the scintillator surface. This results in gradients in all tiles, because these tiles are somehow not detected as outliers.