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hoogenboom-group
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scripted-render-pipeline
automated pipeline interfacing with render-ws rest api
GNU General Public License v3.0
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read the capture time from the IJMetadata tag
#26
thopp-tudelft
closed
2 months ago
2
add option to reuse existing mipmaps in import
#25
thopp-tudelft
closed
2 weeks ago
0
Artifact detection in post-correction fails to remove substrate tiles
#24
arentkievits
opened
4 months ago
1
add new exporter
#23
thopp-tudelft
closed
4 months ago
1
Webknossos multi stack support
#22
skaracoban
closed
5 months ago
0
Support export of multiple stacks to WebKnossos
#21
arentkievits
closed
5 months ago
0
Post correction global
#20
arentkievits
closed
7 months ago
0
Integrate image post-correction as optional parameter in `importer`
#19
arentkievits
opened
8 months ago
0
Add tests
#18
arentkievits
opened
10 months ago
0
Read metadata for corrected stacks from parent directory
#17
arentkievits
opened
10 months ago
0
Extend documentation
#16
arentkievits
closed
2 months ago
1
Write pyramidal tiff files using `tifffile`
#15
arentkievits
closed
10 months ago
1
Directly export to wk cube format
#14
arentkievits
closed
4 months ago
5
Add `stitcher`
#13
arentkievits
opened
10 months ago
1
Add post correction
#12
arentkievits
closed
10 months ago
3
Add export script
#11
arentkievits
closed
10 months ago
0
`call_wk_conversion_script` does not work properly because shell is `dash`
#10
arentkievits
closed
10 months ago
3
Added `export` for CATMAID datasets but cannot connect to Render
#9
arentkievits
closed
10 months ago
3
FAST-EM inconveniently writes data to `long_term_storage/asm_storage/asm_service/[date]/[project]`
#8
arentkievits
closed
5 months ago
5
Require Python 3.10 or higher
#7
arentkievits
closed
1 year ago
0
'Tile' class in render_specs.py is missing 'height' and 'width' properties
#6
arentkievits
closed
1 year ago
2
clem_mipmapper automatically inverts contrast
#5
arentkievits
opened
1 year ago
3
match case requires Python >=3.10
#4
arentkievits
closed
1 year ago
0
x_by_y is switched around for fastem mipmapper
#3
lanery
closed
1 year ago
0
Request for 16bit tiff image results in numpy array with dtype '>u2'
#2
lanery
closed
1 year ago
2
tileIds are wacky
#1
lanery
closed
1 year ago
3