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horosproject / horos

Horos™ is a free, open source medical image viewer. The goal of the Horos Project is to develop a fully functional, 64-bit medical image viewer for OS X. Horos is based upon OsiriX and other open source medical imaging libraries. Horos is made freely available under the GNU Lesser General Public License, Version 3 (LGPL-3.0). Horos is linked against the Grok JPEG 2000 library, for fast viewing of JPEG 2000 images. This library is licensed under the terms of the GNU Affero General Public License.
http://www.horosproject.org
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Horos keeps crashing while web server running #483

Open ptsii opened 5 years ago

ptsii commented 5 years ago

Horos seems to keep crashing while I have the web server running. Here is the crash info:

Process: Horos [50463] Path: /Applications/Horos.app/Contents/MacOS/Horos Identifier: org.horosproject.horos Version: 3.3.5 (20181207) Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: Horos [50463] User ID: 501

Date/Time: 2019-05-01 05:48:24.723 -0400 OS Version: Mac OS X 10.14.4 (18E226) Report Version: 12 Bridge OS Version: 3.4 (16P4507) Anonymous UUID: 4BF064BF-85B3-86EC-0744-8D984D790467

Time Awake Since Boot: 400000 seconds

System Integrity Protection: enabled

Crashed Thread: 4 WebPortal connection thread

Exception Type: EXC_BAD_INSTRUCTION (SIGILL) Exception Codes: 0x0000000000000001, 0x0000000000000000 Exception Note: EXC_CORPSE_NOTIFY

Termination Signal: Illegal instruction: 4 Termination Reason: Namespace SIGNAL, Code 0x4 Terminating Process: exc handler [50463]

Application Specific Information: CFRelease() called with NULL

Thread 0:: Dispatch queue: com.apple.main-thread 0 libsystem_kernel.dylib 0x00007fff5ebe622a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff5ebe676c mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff3263e13e CFRunLoopServiceMachPort + 328 3 com.apple.CoreFoundation 0x00007fff3263d6ac CFRunLoopRun + 1612 4 com.apple.CoreFoundation 0x00007fff3263ce0e CFRunLoopRunSpecific + 455 5 com.apple.HIToolbox 0x00007fff319299db RunCurrentEventLoopInMode + 292 6 com.apple.HIToolbox 0x00007fff31929715 ReceiveNextEventCommon + 603 7 com.apple.HIToolbox 0x00007fff319294a6 _BlockUntilNextEventMatchingListInModeWithFilter + 64 8 com.apple.AppKit 0x00007fff2fcc3ffb _DPSNextEvent + 965 9 com.apple.AppKit 0x00007fff2fcc2d93 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1361 10 com.apple.AppKit 0x00007fff2fcbceb0 -[NSApplication run] + 699 11 com.apple.AppKit 0x00007fff2fcac3f0 NSApplicationMain + 777 12 libdyld.dylib 0x00007fff5eab13d5 start + 1

Thread 1:: com.apple.CFSocket.private 0 libsystem_kernel.dylib 0x00007fff5ebed61a select + 10 1 com.apple.CoreFoundation 0x00007fff3266bad2 CFSocketManager + 635 2 libsystem_pthread.dylib 0x00007fff5ec9f2eb _pthread_body + 126 3 libsystem_pthread.dylib 0x00007fff5eca2249 _pthread_start + 66 4 libsystem_pthread.dylib 0x00007fff5ec9e40d thread_start + 13

Thread 2:: DICOM Store-SCP 0 libsystem_kernel.dylib 0x00007fff5ebed61a __select + 10 1 Horos 0x0000000104b59576 ASC_associationWaiting(T_ASC_Network, int) + 134 2 Horos 0x0000000104884733 DcmQueryRetrieveSCP::waitForAssociation(T_ASC_Network) + 99 3 Horos 0x000000010486a8ef -[DCMTKQueryRetrieveSCP run] + 2175 4 Horos 0x00000001045be2c7 -[AppController startSTORESCP:] + 519 5 com.apple.Foundation 0x00007fff3488987e NSThreadstart__ + 1194 6 libsystem_pthread.dylib 0x00007fff5ec9f2eb _pthread_body + 126 7 libsystem_pthread.dylib 0x00007fff5eca2249 _pthread_start + 66 8 libsystem_pthread.dylib 0x00007fff5ec9e40d thread_start + 13

Thread 3:: WebPortal server thread 0 com.apple.CoreFoundation 0x00007fff3261156a -[_CFXNotificationRegistrar find:object:observer:enumerator:] + 768 1 com.apple.CoreFoundation 0x00007fff32610c87 _CFXNotificationPost + 732 2 com.apple.Foundation 0x00007fff34889217 -[NSNotificationCenter postNotificationName:object:userInfo:] + 66 3 Horos 0x000000010492382f MyCFSocketCallback + 127 4 com.apple.CoreFoundation 0x00007fff326f2db2 CFSocketPerformV0 + 976 5 com.apple.CoreFoundation 0x00007fff3265a5e3 CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION + 17 6 com.apple.CoreFoundation 0x00007fff3265a589 CFRunLoopDoSource0 + 108 7 com.apple.CoreFoundation 0x00007fff3263df3b CFRunLoopDoSources0 + 195 8 com.apple.CoreFoundation 0x00007fff3263d505 CFRunLoopRun + 1189 9 com.apple.CoreFoundation 0x00007fff3263ce0e CFRunLoopRunSpecific + 455 10 com.apple.Foundation 0x00007fff34893a9f -[NSRunLoop(NSRunLoop) runMode:beforeDate:] + 280 11 Horos 0x0000000104984d24 -[WebPortal startServerThread] + 740 12 com.apple.Foundation 0x00007fff3488987e NSThreadstart__ + 1194 13 libsystem_pthread.dylib 0x00007fff5ec9f2eb _pthread_body + 126 14 libsystem_pthread.dylib 0x00007fff5eca2249 _pthread_start + 66 15 libsystem_pthread.dylib 0x00007fff5ec9e40d thread_start + 13

Thread 4 Crashed:: WebPortal connection thread 0 com.apple.CoreFoundation 0x00007fff3260cd0d CFRelease + 109 1 Horos 0x0000000104924c0a -[AsyncSocket close] + 186 2 Horos 0x00000001049244c7 MyCFReadStreamCallback + 103 3 com.apple.CoreFoundation 0x00007fff326b1d5d _signalEventSync + 223 4 com.apple.CoreFoundation 0x00007fff326b1c14 _cfstream_shared_signalEventSync + 358 5 com.apple.CoreFoundation 0x00007fff3265a5e3 CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION + 17 6 com.apple.CoreFoundation 0x00007fff3265a589 CFRunLoopDoSource0 + 108 7 com.apple.CoreFoundation 0x00007fff3263df3b CFRunLoopDoSources0 + 195 8 com.apple.CoreFoundation 0x00007fff3263d505 CFRunLoopRun + 1189 9 com.apple.CoreFoundation 0x00007fff3263ce0e CFRunLoopRunSpecific + 455 10 com.apple.Foundation 0x00007fff34893a9f -[NSRunLoop(NSRunLoop) runMode:beforeDate:] + 280 11 Horos 0x0000000104985238 -[WebPortal connectionsThread:] + 504 12 com.apple.Foundation 0x00007fff3488987e NSThreadstart + 1194 13 libsystem_pthread.dylib 0x00007fff5ec9f2eb _pthread_body + 126 14 libsystem_pthread.dylib 0x00007fff5eca2249 _pthread_start + 66 15 libsystem_pthread.dylib 0x00007fff5ec9e40d thread_start + 13

Thread 5:: WebPortal connection thread 0 libsystem_kernel.dylib 0x00007fff5ebe622a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff5ebe676c mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff3263e13e CFRunLoopServiceMachPort + 328 3 com.apple.CoreFoundation 0x00007fff3263d6ac CFRunLoopRun + 1612 4 com.apple.CoreFoundation 0x00007fff3263ce0e CFRunLoopRunSpecific + 455 5 com.apple.Foundation 0x00007fff34893a9f -[NSRunLoop(NSRunLoop) runMode:beforeDate:] + 280 6 Horos 0x0000000104985238 -[WebPortal connectionsThread:] + 504 7 com.apple.Foundation 0x00007fff3488987e NSThreadstart__ + 1194 8 libsystem_pthread.dylib 0x00007fff5ec9f2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff5eca2249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff5ec9e40d thread_start + 13

Thread 6:: WebPortal connection thread 0 libsystem_kernel.dylib 0x00007fff5ebe622a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff5ebe676c mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff3263e13e CFRunLoopServiceMachPort + 328 3 com.apple.CoreFoundation 0x00007fff3263d6ac CFRunLoopRun + 1612 4 com.apple.CoreFoundation 0x00007fff3263ce0e CFRunLoopRunSpecific + 455 5 com.apple.Foundation 0x00007fff34893a9f -[NSRunLoop(NSRunLoop) runMode:beforeDate:] + 280 6 Horos 0x0000000104985238 -[WebPortal connectionsThread:] + 504 7 com.apple.Foundation 0x00007fff3488987e NSThreadstart__ + 1194 8 libsystem_pthread.dylib 0x00007fff5ec9f2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff5eca2249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff5ec9e40d thread_start + 13

Thread 7:: WebPortal connection thread 0 libsystem_kernel.dylib 0x00007fff5ebe622a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff5ebe676c mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff3263e13e CFRunLoopServiceMachPort + 328 3 com.apple.CoreFoundation 0x00007fff3263d6ac CFRunLoopRun + 1612 4 com.apple.CoreFoundation 0x00007fff3263ce0e CFRunLoopRunSpecific + 455 5 com.apple.Foundation 0x00007fff34893a9f -[NSRunLoop(NSRunLoop) runMode:beforeDate:] + 280 6 Horos 0x0000000104985238 -[WebPortal connectionsThread:] + 504 7 com.apple.Foundation 0x00007fff3488987e NSThreadstart__ + 1194 8 libsystem_pthread.dylib 0x00007fff5ec9f2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff5eca2249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff5ec9e40d thread_start + 13

Thread 8:: com.apple.NSURLConnectionLoader 0 libsystem_kernel.dylib 0x00007fff5ebe622a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff5ebe676c mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff3263e13e CFRunLoopServiceMachPort + 328 3 com.apple.CoreFoundation 0x00007fff3263d6ac CFRunLoopRun + 1612 4 com.apple.CoreFoundation 0x00007fff3263ce0e CFRunLoopRunSpecific + 455 5 com.apple.CFNetwork 0x00007fff315b1380 -[CoreSchedulingSetRunnable runForever] + 210 6 com.apple.Foundation 0x00007fff3488987e NSThreadstart + 1194 7 libsystem_pthread.dylib 0x00007fff5ec9f2eb _pthread_body + 126 8 libsystem_pthread.dylib 0x00007fff5eca2249 _pthread_start + 66 9 libsystem_pthread.dylib 0x00007fff5ec9e40d thread_start + 13

Thread 9:: com.apple.NSEventThread 0 libsystem_kernel.dylib 0x00007fff5ebe622a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff5ebe676c mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff3263e13e CFRunLoopServiceMachPort + 328 3 com.apple.CoreFoundation 0x00007fff3263d6ac CFRunLoopRun + 1612 4 com.apple.CoreFoundation 0x00007fff3263ce0e CFRunLoopRunSpecific + 455 5 com.apple.AppKit 0x00007fff2fccbd1a _NSEventThread + 175 6 libsystem_pthread.dylib 0x00007fff5ec9f2eb _pthread_body + 126 7 libsystem_pthread.dylib 0x00007fff5eca2249 _pthread_start + 66 8 libsystem_pthread.dylib 0x00007fff5ec9e40d thread_start + 13

Thread 10: 0 libsystem_pthread.dylib 0x00007fff5ec9e3f0 start_wqthread + 0

Thread 4 crashed with X86 Thread State (64-bit): rax: 0x00007fff3298475f rbx: 0x00006000029c1860 rcx: 0x0000000000000007 rdx: 0x00007fff5d299f18 rdi: 0x0000000000000000 rsi: 0x00000000000120a8 rbp: 0x000070000ea4fc90 rsp: 0x000070000ea4fc90 r8: 0x00000000000130a8 r9: 0x00007ffb6e612f78 r10: 0x0000000000000000 r11: 0x00007ffb6e612f70 r12: 0x0000600001c1f0c0 r13: 0x00006000029c1860 r14: 0x0000000000000020 r15: 0x00007fff5d275680 rip: 0x00007fff3260cd0d rfl: 0x0000000000010246 cr2: 0x000070000e8f8ff8

Logical CPU: 1 Error Code: 0x00000000 Trap Number: 6

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0x7fff5ec91fff libsystem_notify.dylib (172.200.21) <679E9132-1A46-326E-9A11-D3FF9C86041C> /usr/lib/system/libsystem_notify.dylib 0x7fff5ec92000 - 0x7fff5ec9bfef libsystem_platform.dylib (177.250.1) <3CC59141-5365-3848-94C3-D65E6FCA1E74> /usr/lib/system/libsystem_platform.dylib 0x7fff5ec9c000 - 0x7fff5eca6ff7 libsystem_pthread.dylib (330.250.2) <4344198A-A1A3-3C52-97B4-F168D56E9789> /usr/lib/system/libsystem_pthread.dylib 0x7fff5eca7000 - 0x7fff5ecaaff7 libsystem_sandbox.dylib (851.250.12) <66E91015-F62A-3365-BB81-AA88707E8F12> /usr/lib/system/libsystem_sandbox.dylib 0x7fff5ecab000 - 0x7fff5ecadff3 libsystem_secinit.dylib (30.220.1) /usr/lib/system/libsystem_secinit.dylib 0x7fff5ecae000 - 0x7fff5ecb5ff3 libsystem_symptoms.dylib (820.257.1) /usr/lib/system/libsystem_symptoms.dylib 0x7fff5ecb6000 - 0x7fff5eccbfff libsystem_trace.dylib (906.250.5) /usr/lib/system/libsystem_trace.dylib 0x7fff5eccd000 - 0x7fff5ecd2ffb libunwind.dylib (35.4) <8F0BC197-B97C-3DDC-92B0-6A7D3CB72FD8> /usr/lib/system/libunwind.dylib 0x7fff5ecd3000 - 0x7fff5ed02ff7 libxpc.dylib (1336.251.2) <49138829-09C8-355C-B558-97E070B84EC5> /usr/lib/system/libxpc.dylib

External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 10925 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 32261102 thread_create: 0 thread_set_state: 0

VM Region Summary: ReadOnly portion of Libraries: Total=547.1M resident=0K(0%) swapped_out_or_unallocated=547.1M(100%) Writable regions: Total=701.8M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=701.8M(100%)

                            VIRTUAL   REGION

REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 256K 2 Activity Tracing 256K 1 CG backing stores 8616K 3 CG image 1624K 343 CoreAnimation 26.6M 52 CoreData Object IDs 4100K 2 CoreGraphics 8K 1 CoreImage 236K 53 CoreUI image data 896K 19 CoreUI image file 528K 3 Foundation 4K 1 Image IO 10.3M 193 Kernel Alloc Once 8K 1 MALLOC 370.3M 93 MALLOC guard page 64K 15 MALLOC_LARGE (reserved) 264K 1 reserved VM address space (unallocated) MALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated) Memory Tag 242 12K 1 SQLite page cache 6784K 24 STACK GUARD 56.0M 11 Stack 13.1M 11 VM_ALLOCATE 1216K 17 DATA 45.0M 364 FONT_DATA 4K 1 GLSLBUILTINS 5176K 1 LINKEDIT 229.4M 10 TEXT 317.7M 363 UNICODE 564K 1 libnetwork 640K 6 mapped file 63.0M 44 shared memory 648K 13 =========== ======= ======= TOTAL 1.4G 1651 TOTAL, minus reserved VM space 1.1G 1651

Model: Macmini8,1, BootROM 220.250.366.0.0 (iBridge: 16.16.4507.0.0,0), 6 processors, Intel Core i5, 3 GHz, 32 GB, SMC Graphics: kHW_IntelUHDGraphics630Item, Intel UHD Graphics 630, spdisplays_builtin Memory Module: BANK 0/ChannelA-DIMM0, 16 GB, DDR4, 2667 MHz, 859B, CT16G4SFD8266.M16FE Memory Module: BANK 2/ChannelB-DIMM0, 16 GB, DDR4, 2667 MHz, 859B, CT16G4SFD8266.M16FE AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x7BF), wl0: Feb 21 2019 21:04:15 version 9.137.3.0.32.6.29 FWID 01-d837a364 Bluetooth: Version 6.0.11f4, 3 services, 27 devices, 1 incoming serial ports Network Service: Ethernet, Ethernet, en0 Network Service: Wi-Fi, AirPort, en1 PCI Card: pci1b21,625, AHCI Controller, Thunderbolt@70,0,0 PCI Card: pci1b21,625, AHCI Controller, Thunderbolt@71,0,0 Serial ATA Device: WDC WD4004FZWX-00GBGB0, 4 TB USB Device: USB 3.1 Bus USB Device: Keyboard Hub USB Device: Apple Optical USB Mouse USB Device: Apple Keyboard USB Device: iBridge Bus USB Device: Headset USB Device: iBridge Thunderbolt Bus: Mac mini, Apple Inc., 34.6 Thunderbolt Device: ThunderBay 43, Other World Computing, 1, 26.2 Thunderbolt Bus: Mac mini, Apple Inc., 34.6

ptsii commented 5 years ago

Happened again.

ptsii commented 5 years ago

...and again. Not sure anyone is watching this, and perhaps I'm the only one with this problem. If anyone has any suggestions, don't be shy

FabriceHx commented 5 years ago

Did you try OsiriX? We use it 24/7 without any issues. And it includes a great HTML viewer for the web server.

ptsii commented 5 years ago

The version of OsiriX that we would need costs $699 per year (the free ‘lite’ version doesn’t allow you to view large files, and constantly badgers you to upgrade).

FabriceHx commented 5 years ago

$699 is not an annual subscription. We only paid this amount for one licence 2 years ago. Not really expensive to run a server 24/7 with more than 80 users.

You will have to choose between $699 and crashes 😬...

ptsii commented 5 years ago

Is the $699 version upgradeable continuously? If not, then you are also going to have to pony up for another $699 as soon as they change something. This is great for a for-profit entity, but I don't have lots of money to spend on these things if I don't have to. Regarding Horos crashing: Do you have any suggestions (other than "use different software")? It might be that's what we'll have to do, but it might also be that there is a fix.

FabriceHx commented 5 years ago

The $699 price includes 1 year of upgrades. You can then optionally renew for a new year for $400. We are currently running version 9.0 without problems and without upgrades.

You should maybe try to contact directly the main developer of Horos. According to this page, it’s rossetantoine: https://github.com/horosproject/horos/graphs/contributors (no activity on Horos since 2014? 😱)

DD-P commented 5 years ago

Antoine Rosset is the CEO of the company behind OsiriX and its original programmer, which is why he has over 10 years of commit history in the Horos project. I am confident he would not wish to respond to Horos bug reports, as he has not been involved in this project since it was forked from OsiriX.

For Background Horos is an open source fork of OsiriX, which became (officially) closed source some 5 years ago. OsiriX was a wonderful gift to the global imaging community up to that time but commercial factors took it in a new direction. Those leading the Horos project then provided a great service to this community by taking the last publicly available source code snapshot (which was about two years behind) and bringing it up to date. This allowed it to compile on modern systems and produce an uncompromised 64 bit application and was a challenging task.

Horos is extremely complex software with a very large code base. It takes quite some time to compile on the highest specification of Mac hardware and carries much technical debt. It is a very difficult code base to work on and the number of developers experienced in manual retain-release Objective-C around the world is also reducing.

It seems that development on Horos has slowed or effectively stopped over the last year. I hope development could start up again and am personally happy to contribute to this effort if the maintainers became able.

It may be that we have reached the end of the line for Horos / open-source OsiriX. Perhaps a new open source imaging viewer project would start or someone else will pick up the mantle. In the meantime, if you like using the application I would suggest using the fully supported commercial OsiriX, as mentioned above. I have not used modern OsiriX myself but comments in this project and elsewhere indicate it is generally fast and stable and it is clearly under active development.

With best wishes, David