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horsepurve / DeepB3P3

Masked peptides for low-data peptide drug discovery (BiB 2023)
MIT License
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How to use without training it again？ #1

Open yikehuaili opened 1 month ago

yikehuaili commented 1 month ago

Dear author, thank you very much for your contribution！ Now I would like to use the model you have trained to predict whether my peptide can cross the blood-brain barrier. What should I do？

horsepurve commented 1 month ago

Hi! Sorry for the delayed reply. To use it without training, please download the code, also download the trained model from Google Drive, then unzip to 'DeepB3P3/collect/8/max75', and run jupyter notebook 'DeepB3P3_Analysis.ipynb'. To do prediction on your peptides, input them into the test txt file. Please let me know if you have any issues downloading the models, or running the code. Thanks!

horsepurve commented 3 weeks ago

Now the prediction can be run online: https://colab.research.google.com/drive/1Dwiwsgj8wGzZ9TGz4uH5yUeR6bVz_x4a?usp=sharing