how to set hg38 for annotation genome?

hovestadtlab / conumee2

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how to set hg38 for annotation genome? #5

Open seetarajpara opened 1 month ago

seetarajpara commented 1 month ago

Just wanted to know if there was a way to specify the hg38 reference genome for the CNV.create_anno step, I couldn't find any arguments that allow this but I could have missed something. Thank you!

bjarnedae commented 1 month ago

Hi, thank you for your question. Currently there is no way to specify the hg38 reference genome, but a liftover to hg19 from the EPICv2 probe annotations has been performed and is used as a reference in the CNV.create_anno function for EPICv2 arrays.