Update `setup.md` for the HPC use case

hpc-carpentry / old-hpc-workflows

Scaling studies on high-performance clusters using Snakemake workflows

https://www.hpc-carpentry.org/old-hpc-workflows/

Other

8 stars 2 forks source link

Update `setup.md` for the HPC use case #3

Open ocaisa opened 2 years ago

ocaisa commented 2 years ago

[x] Update the required data files (or do we only generate them instead?)
[ ] Decide on approach(es) to make the required software for the tutorial available (snakemake, amdahl and also probably a plotting tool). Possibilities include
- environment modules
- pip
- conda/mamba

tkphd commented 2 years ago

I think the required files are the amdahl package (if not already installed) and the plotting script. Both are Python black-box programs.

tkphd commented 2 years ago

Data files will be generated by Amdahl using the new terse flag.

ocaisa commented 2 years ago

Having to pull the tarball is a useful callback to HPC intro, and we'll still need it to pull down the plotting script (and whatever else) so we don't lose anything by generating the raw data ourselves.