hpcaitech / FastFold

Optimizing AlphaFold Training and Inference on GPU Clusters
Apache License 2.0
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Request for guidance on generating fastfold training cache files #190

Open morou34 opened 4 months ago

morou34 commented 4 months ago

Hi ; I am in the process of setting up FastFold for training and encountered a requirement for 2specific cache files: mmcif_cache.json and chain_data_cache.json. These files appear to be essential for filtering templates by release dates and managing chain-level data during the training process. Could anyone provide guidance or scripts on how to generate these cache files?

mouaadAI commented 3 months ago

if anyone has the same question here is the solution: https://github.com/aqlaboratory/openfold/tree/main/scripts use openfold scripts to generate the cache files.