hpcaitech / FastFold

Optimizing AlphaFold Training and Inference on GPU Clusters
Apache License 2.0
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Warning: Torch did not find available GPUs on this system. #29

Closed JOJO-wc-rabbit closed 2 years ago

JOJO-wc-rabbit commented 2 years ago

Hi,

When I installed fastfold, I meet the following problem.

image

I think it's because I don't have a cuda environment on the cluster server (cpu node, non-root user) (but the code can be submitted to the gpu node to run). Is there any solution please?

Thanks!

Shenggan commented 2 years ago

I think you need CUDA environment to install fastfold. You can try to use spack install cuda for you non-root cpu node. Or you can submitted the installation to the gpu node.

If the cluster use environment module to manage the software stack, you can directly use some command like module load cuda on your cpu node.

JOJO-wc-rabbit commented 2 years ago

ok,thx!