boegel
commented
5 years ago All integration tests still pass, see below.
Nag message also works for ``:
$ module load Stacks/2.0-intel-2018a
------------------------------------------------------------------
There are messages associated with the following module(s):
------------------------------------------------------------------
Stacks/2.0-intel-2018a:
This Stacks installation is known to have problems, please use Stacks/2.0-foss-2018a or a more recent installation of Stacks instead.
------------------------------------------------------------------[vsc40023@node2625 module]$ ./run_all_tests.sh
Lmod-7.8.4-1.ug.el7.noarch
vsc-cluster-modules-0.30-3.noarch
vsc-cluster-modules-tier2-0.30-3.noarch
> module --version
Modules based on Lua: Version 7.8.4 2018-09-11 14:01 -05:00
$MODULEPATH: /apps/gent/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc
*** 001_list.sh ***
> module list
>>> 001_list.sh: PASS
*** 002_avail.sh ***
> module avail
> module avail GCC
> module avail GCC/4.9.3
>>> 002_avail.sh: PASS
*** 003_load.sh ***
> module load GCC
> module load GCC/4.9.3
> module load intel
> module load foss
> module load Python/2.7.11-intel-2016a
> module load GCC/4.9.3-2.25 OpenMPI/1.10.2-GCC-4.9.3-2.25 OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0 FFTW/3.3.4-gompi-2016a
> module --force purge; module load cluster # with 1 seconds time limit
>>> 003_load.sh: PASS
*** 004_purge.sh ***
> module load Python/2.7.11-intel-2016a
> module purge
> module load cluster
> module purge -force
> module load cluster
> module purge -force
> module load cluster/swalot
>>> 004_purge.sh: PASS
*** 005_swap.sh ***
> module load GCC/4.9.3
> module swap GCC/5.3.0
> module swap GCC GCC/4.9.3
> module swap GCC/4.9.3 GCC/5.3.0
>>> 005_swap.sh: PASS
*** 006_unload.sh ***
> module load GCC/4.9.3
> module unload GCC
> module load GCC/4.9.3
> module unload GCC/4.9.3
>>> 006_unload.sh: PASS
*** 007_spider.sh ***
> module spider intel
> module spider intel/2016a
> module --show-hidden spider intel/2016a
>>> 007_spider.sh: PASS
*** 010_stdout_stderr.sh ***
> module list
> module avail
>>> 010_stdout_stderr.sh: PASS
*** 050_ml.sh ***
> ml av GCC/4.9.3
> ml
> ml GCC/4.9.3
> ml
> ml -GCC/4.9.3
> ml
>>> 050_ml.sh: PASS
*** 051_collections.sh ***
> ml foss/2016a
> ml Python/2.7.11-intel-2016a
> ml save this_is_just_a_test_collection_for_module_integration_test_051
> ml describe this_is_just_a_test_collection_for_module_integration_test_051
> ml purge
> ml restore this_is_just_a_test_collection_for_module_integration_test_051
> ml purge
> module swap cluster/swalot cluster/delcatty
> ml purge
> ml restore this_is_just_a_test_collection_for_module_integration_test_051
> ml purge
>>> 051_collections.sh: PASS
*** 100_lmod_cache.sh ***
> module avail # 2s time limit
>>> 100_lmod_cache.sh: PASS
*** 101_LD_LIBRARY_PATH.sh ***
> module load GCC/4.9.3-2.25
> module load OpenMPI/1.10.2-GCC-4.9.3-2.25
> checking $LD_LIBRARY_PATH...
>>> 101_LD_LIBRARY_PATH.sh: PASS
*** 102_symlink_modulepath.sh ***
> module use /tmp/vsc40023/abr3Pp/symlinked_modules
> module avail test/1.2.3
>>> 102_symlink_modulepath.sh: PASS
*** 103_tcl2lua_LD_PRELOAD.sh ***
> module load jemalloc
> module show jemalloc
> ml intel/2016a && LD_LIBRARY_PATH='' LD_PRELOAD='' ml MariaDB/10.1.14-intel-2016a
>>> 103_tcl2lua_LD_PRELOAD.sh: PASS
TEST RESULT: all 14 passed!
Stacks/2.0-intel-2018ais knows to result in segfaults, I'd rather make it clear to users that there's something wrong with the installation than just remove it.