Open TakuNishiumi opened 3 years ago
I analyzed data of TOI01634.01 observed on 210213.
#optimize the parameter set using differential evolution ta.optimize(500) fig, axs = ta.plot_fit('de');
returns
Optimizing the model: 0% 0/500 [00:00<?, ?it/s] --------------------------------------------------------------------------- ValueError Traceback (most recent call last) <ipython-input-48-da8ec6d1d9c3> in <module> 1 #optimize the parameter set using differential evolution ----> 2 ta.optimize(500) 3 4 fig, axs = ta.plot_fit('de'); ~/github/MuSCAT2_transit_pipeline/muscat2ta/transitanalysis.py in optimize(self, niter, pop, plot_convergence, plot_lc) 207 208 def optimize(self, niter: int = 1000, pop: ndarray = None, plot_convergence: bool = True, plot_lc: bool = False): --> 209 self.lpf.optimize_global(niter, self.npop, pop, label='Optimizing the model') 210 self.pv = self.lpf.de.minimum_location 211 ~/miniconda3/envs/py3/lib/python3.8/site-packages/pytransit/lpf/logposteriorfunction.py in optimize_global(self, niter, npop, population, label, leave, plot_convergence, use_tqdm, plot_parameters) 142 else: 143 self.de._population[:, :] = population --> 144 for _ in tqdm(self.de(niter), total=niter, desc=label, leave=leave, disable=(not use_tqdm)): 145 pass 146 ~/miniconda3/envs/py3/lib/python3.8/site-packages/tqdm/notebook.py in __iter__(self, *args, **kwargs) 251 def __iter__(self, *args, **kwargs): 252 try: --> 253 for obj in super(tqdm_notebook, self).__iter__(*args, **kwargs): 254 # return super(tqdm...) will not catch exception 255 yield obj ~/miniconda3/envs/py3/lib/python3.8/site-packages/tqdm/std.py in __iter__(self) 1164 1165 try: -> 1166 for obj in iterable: 1167 yield obj 1168 # Update and possibly print the progressbar. ~/miniconda3/envs/py3/lib/python3.8/site-packages/pytransit/utils/de.py in _eval_vfun(self, ngen) 221 popt, fitt = self._trial_pop, self._trial_fit 222 --> 223 fitc[:] = self.m * self.minfun(self._population) 224 225 for igen in range(ngen): ~/miniconda3/envs/py3/lib/python3.8/site-packages/pytransit/utils/de.py in __call__(self, x) 248 249 def __call__(self, x): --> 250 return self.f(x, *self.args, **self.kwargs) ~/miniconda3/envs/py3/lib/python3.8/site-packages/pytransit/lpf/logposteriorfunction.py in lnposterior(self, pv) 118 119 def lnposterior(self, pv): --> 120 lnp = self.lnprior(pv) + self.lnlikelihood(pv) 121 return where(isfinite(lnp), lnp, -inf) 122 ~/miniconda3/envs/py3/lib/python3.8/site-packages/pytransit/lpf/lpf.py in lnlikelihood(self, pvp) 444 445 for lnlikelihood in self._lnlikelihood_models: --> 446 lnl += lnlikelihood(pvp, fmodel) 447 return lnl 448 ~/github/MuSCAT2_transit_pipeline/muscat2ta/m2lpf.py in __call__(self, pvp, model) 206 return lnlike_logistic_v1d(self.lpf.ofluxa, flux_m, err, self.lpf.lcids) 207 else: --> 208 return lnlike_logistic_v(self.lpf.relative_flux(pvp), flux_m, err, self.lpf.lcids) 209 210 class M2LPF(BaseLPF): ~/github/MuSCAT2_transit_pipeline/muscat2ta/m2lpf.py in relative_flux(self, pv) 781 return self.ofluxa 782 else: --> 783 return self.target_flux(pv) / self.reference_flux(pv) 784 785 def target_flux(self, pv): ~/github/MuSCAT2_transit_pipeline/muscat2ta/m2lpf.py in target_flux(self, pv) 790 off = zeros((p.shape[0], self.timea.size)) 791 for i, sl in enumerate(self.lcslices): --> 792 off[:, sl] = self.target_fluxes[i][:, p].T 793 return squeeze(off) 794 ValueError: could not broadcast input array from shape (200,0) into shape (200,239)
Hi Taku,
I can't repeat this error, the optimization works ok for me. Can you send me your analysis notebook and I'll try to run it.
Cheers, Hannu
I analyzed data of TOI01634.01 observed on 210213.
returns