hputnam Becker_E5 issues

hputnam / Becker_E5

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GO analysis and plotting scripts

#15 hputnam opened 2 months ago
5
Check that each gene name from the Annotation file is found in your gene counts matrix file and also in your gff3 file

#14 hputnam closed 4 months ago
5
Clarify the Annotation file

#13 hputnam closed 4 months ago
4
compile a file on OSF for all Sanger Sequencing with sub files containing all raw reads and their identification table

#12 hputnam opened 4 months ago
1
Check genetic relatedness of all samples from BSSNPer and RNASeq SNP calling

#11 hputnam closed 2 months ago
2
Check to ensure the repository is self contained

#10 hputnam closed 4 months ago
1
Include accession numbers for PocHistone Reference Sequences.

#9 hputnam closed 4 months ago
7
Bioinformatics is using the "modified" gff and the GO enrichment is using the reefgenomics original gff

#8 hputnam closed 4 months ago
4
Run one RNASeq sample in stringtie against a "fixed" gff3 and compare it to Polina's "modified" gff3 to see of counts are being assigned to the same gene

#7 hputnam closed 3 months ago
9
DESeq2 results were backwards for up and down regulated

#6 hputnam closed 4 months ago
9
RNASeq PERMANOVA

#5 hputnam closed 4 months ago
2
Describe assembly stats in workflow to show reasons for what was done

#4 hputnam closed 4 months ago
7
add any code for and output files of modification of the Pver genome gff file to the repository

#3 hputnam closed 4 months ago
11
change xls files to csv files throughout the repository

#2 hputnam closed 4 months ago
1
Location(s) of data (e.g. BAMs, Bismark output files)?

#1 kubu4 closed 4 months ago
0