confirm ANOVAs for BS conversion efficiency

[shellywanamaker]

Using the conversion efficiencies calculated by this code I ran ANOVAs as follows:

• For P. acuta samples: lambda conversion efficiency ~ library prep method
• For M. capitata samples: lambda conversion efficiency ~ library prep method
• For P. acuta samples: conversion efficiency ~ conversion efficiency calculation method (lambda or estimated from coral CHH and CHG methylation)
• For M. capitata samples: conversion efficiency ~ conversion efficiency calculation method (lambda or estimated from coral CHH and CHG methylation)

Here is the summary of ANVOA results: https://github.com/hputnam/Meth_Compare/blob/master/OLD_Output/conversion_efficiency_stats.csv

Although the conversion efficiencies are within a small range (98.6 -99.3% in M. capitata and 98.3 -99.1% in P. acuta), I did in fact detect a difference in conversion efficiency calculated by lambda alignments across methods which is plotted in panel A

Does this make sense @hputnam ?