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hputnam
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Moorea_Sym
Symbiodinium communities of specifist and generalist corals
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Days over 30 and under 27
#34
daniclaar
opened
6 years ago
0
final check on main analysis rmd
#33
hputnam
opened
6 years ago
0
Final check on temp analysis code
#32
hputnam
opened
6 years ago
0
README update
#31
hputnam
opened
6 years ago
1
Finalize CAP analysis
#30
hputnam
opened
6 years ago
2
Rerun Makefile from scratch
#29
jrcunning
closed
6 years ago
9
Make Table 2: CCA results
#28
jrcunning
closed
6 years ago
2
Make Table 1: temp PC loadings
#27
jrcunning
opened
7 years ago
1
Look at adding indicator taxa
#26
daniclaar
closed
7 years ago
0
finalize figures
#25
jrcunning
closed
6 years ago
10
add R tasks and validate Makefile
#24
jrcunning
closed
6 years ago
7
Plot PCoA to show where the centroid is located as well as the dispersion around centroid
#23
jrcunning
closed
7 years ago
1
Re run PCA, PC tests, and NMDS with phylogenetically-informed beta diversity
#22
daniclaar
closed
7 years ago
5
Add table for temp variable values
#21
daniclaar
closed
7 years ago
1
Calculate MMM from Moorea LTER temperature
#20
daniclaar
closed
7 years ago
3
Create temperature regime multi-axis plot
#19
jrcunning
closed
7 years ago
1
Move count filtering into Makefile
#18
jrcunning
closed
7 years ago
1
Update temperature metrics
#17
jrcunning
closed
7 years ago
3
Alpha diversity vs. temperature regimes
#16
jrcunning
closed
7 years ago
1
Beta diversity vs. Temperature regime across sites
#15
jrcunning
closed
7 years ago
1
edit get_Moorea_seqs_script.sh to include barcode trimming
#14
hputnam
closed
7 years ago
2
generate mapping files for trimming
#13
hputnam
closed
7 years ago
1
blasting to remote database
#12
jrcunning
closed
7 years ago
11
Symbiodinium community metrics
#11
jrcunning
closed
7 years ago
15
Compare 100% with 97%-within-sample OTUs
#10
jrcunning
closed
7 years ago
2
OTU/sample count thresholding
#9
jrcunning
closed
7 years ago
1
Multivariate temperature analysis
#8
jrcunning
closed
7 years ago
1
2008 temperatures
#7
jrcunning
closed
7 years ago
6
Yost_1944F_fixed.fna file?
#6
jrcunning
closed
7 years ago
3
Thoughts on 97% OTU and/vs MED?
#5
hputnam
closed
7 years ago
7
Use Slack?
#4
daniclaar
closed
7 years ago
3
Check for all temp data available between 2006 and 2009
#3
hputnam
closed
7 years ago
1
Set initial and biweekly meetings
#2
hputnam
closed
7 years ago
4
Double check master list and rerun make file
#1
hputnam
closed
7 years ago
4