'Rxoygenisation' / modernisation of mstate package using Rd2roxygen
creation of imports.R file to manage namespace with devtools::document()
datasets.R files used for documentation of datasets
Plotting functionality
Ggplot2 alternatives to plot.msfit() and plot.probtrans(), with use of use.ggplot = T . These plotting functions use data.table as the workhorse behind the scenes for preparing the data.
vis.multiple.pt() allows comparison of multiple probtrans objects / references patients
Functions accomodate confidence intervals
Vignette created for demonstrating visuals 'visuals_demo.Rmd', can be previewed using devtools::build_vignettes()
Misc
Addition of a readme file with cran badges (installation statistics) and installation instructions
Update of description file
Passes CRAN check without errors or warnings devtools::check()
Hein to-do after pull request:
Change version number in description file
Test plotting functions/adding plot.MarkovTest to visualisation vignette
Summary of changes
'Rxoygenisation' / modernisation of mstate package using Rd2roxygen
devtools::document()Plotting functionality
plot.msfit()andplot.probtrans(), with use ofuse.ggplot = T. These plotting functions use data.table as the workhorse behind the scenes for preparing the data.vis.multiple.pt()allows comparison of multiple probtrans objects / references patientsdevtools::build_vignettes()Misc
devtools::check()Hein to-do after pull request: