I am running on MacOS terminal. The installation of pipits_env is done without issues and the test with your mock data worked out fine. I am running pipits_process command and it seems stopped at the UCHIME database downloading step. Please see below.
Hi @hsgweon
I am running on MacOS terminal. The installation of pipits_env is done without issues and the test with your mock data worked out fine. I am running pipits_process command and it seems stopped at the UCHIME database downloading step. Please see below.
$ pipits_process -i ./tagged-its2/ITS2.assembled_tag.fasta -o out_process --unite 02.02.2019 pipits_process 2.4, the PIPITS Project https://github.com/hsgweon/pipits
2020-01-17 12:52:53 pipits_process started 2020-01-17 12:52:53 Generating a sample list from the input sequences 2020-01-17 12:52:54 Downloading UNITE trained database, version: 02.02.2019 [#################################################################################]100% | 6.1 MiB/s | 111590718 of 111590718 | Time: 0:00:17 File size: 106.42 MB 2020-01-17 12:53:19 ... Unpacking 2020-01-17 12:53:25 ... done 2020-01-17 12:53:25 Downloading WARCUP trained database: [###################################################################################]100% | 13.9 MiB/s | 17880783 of 17880783 | Time: 0:00:01 File size: 17.05 MB 2020-01-17 12:53:27 ... Unpacking 2020-01-17 12:53:28 ... done 2020-01-17 12:53:28 Downloading UCHIME database for chimera filtering:
Does is usually takes time during this step? It has been around 30 min without any change. Thank you!