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hsieh42 / exit_process

Exit process and project boards for tracking issues.
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build texture feature binaries into project directories #18

Open hsieh42 opened 5 years ago

hsieh42 commented 5 years ago

Actually, it will also be good if @gastouna you try building it too. I'll update the Readme.txt in the SVN repository and see if you can do it.

hsieh42 commented 5 years ago

Readme.txt updated in https://sbia-svn/projects/CBIG-TextureAnalysis/branches/TextureAnalysis-0.1/. In the Readme.txt you can find the build dependency and build process.

gastouna commented 5 years ago

I tried to build the texture feature binaries and then compile and test the texture feature pipeline (branch 0.1), but something seems to be wrong.

Building the binaries went ok, although I got a bunch of warnings after doing make.

Then I compiled (using Matlab 2014b) the texture pipeline, and when I tested it I got the following error for all features:

/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libitkIOTransformDCMTK-4.13.so.1)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libITKDICOMParser-4.13.so.1)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libITKIOBruker-4.13.so.1)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libITKIOHDF5-4.13.so.1)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libITKIOLSM-4.13.so.1)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libITKIOMINC-4.13.so.1)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libITKIOMesh-4.13.so.1)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libITKIOMesh-4.13.so.1)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libITKVtkGlue-4.13.so.1)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libdcmdata.so.11)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libdcmimage.so.11)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libdcmimgle.so.11)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libdcmjpeg.so.11)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libdcmjpls.so.11)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libdcmpstat.so.11)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libdcmsr.so.11)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/liboflog.so.11)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libITKIOXML-4.13.so.1)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libITKFEM-4.13.so.1)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libITKFEM-4.13.so.1)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libitkgdcmMSFF-4.13.so.1)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libitkgdcmDICT-4.13.so.1)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libitkgdcmDSED-4.13.so.1)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libITKIOJPEG-4.13.so.1)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libITKMetaIO-4.13.so.1)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libITKMetaIO-4.13.so.1)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libITKIONIFTI-4.13.so.1)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libITKIOTransformHDF5-4.13.so.1)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libITKIOTransformInsightLegacy-4.13.so.1)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libITKTransformFactory-4.13.so.1)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libITKTransformFactory-4.13.so.1)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libITKIOVTK-4.13.so.1)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libITKVideoIO-4.13.so.1)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib64/libopencv_dnn.so.3.4)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.18' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib64/libopencv_dnn.so.3.4)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib64/libopencv_dnn.so.3.4)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib64/libopencv_ml.so.3.4)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib64/libopencv_ml.so.3.4)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib64/libopencv_objdetect.so.3.4)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib64/libopencv_objdetect.so.3.4)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib64/libopencv_shape.so.3.4)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib64/libopencv_calib3d.so.3.4)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib64/libopencv_calib3d.so.3.4)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib64/libopencv_features2d.so.3.4)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib64/libopencv_flann.so.3.4)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.18' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib64/libopencv_flann.so.3.4)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib64/libopencv_photo.so.3.4)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib64/libopencv_photo.so.3.4)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib64/libopencv_video.so.3.4)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/bin/glnxa64/libtiff.so.5: no version information available (required by /cbica/software/external/dependency_bundle/centos7/3817/lib64/libopencv_imgcodecs.so.3.4)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib64/libopencv_imgcodecs.so.3.4)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib64/libopencv_imgproc.so.3.4)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib64/libopencv_imgproc.so.3.4)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib64/libopencv_viz.so.3.4)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib64/libopencv_core.so.3.4)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib64/libopencv_core.so.3.4)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libvtkRenderingOpenGL2-8.1.so.1)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libvtkRenderingOpenGL2-8.1.so.1)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libvtkRenderingCore-8.1.so.1)
/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test/FirstOrderStatisticsImage: /cbica/software/external/matlab/R2014B/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.18' not found (required by /cbica/software/external/dependency_bundle/centos7/3817/lib/libvtkRenderingCore-8.1.so.1)
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hsieh42 commented 5 years ago

What was the command? How did you run it?

See the elog thread: https://cbica-infr-velog.uphs.upenn.edu/elog/CBICA+Cluster/14655 and Mark's reply: https://cbica-infr-velog.uphs.upenn.edu/elog/CBICA+Cluster/14666

gastouna commented 5 years ago

I ran it interactively in Matlab 2014b:

computeTextureFeature('/cbica/projects/Prospr/Data/BreastAnatomy/dicoms/2036311/DPm.1.2.840.113681.2863050713.1318230214.3060.1227', '/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/test_results', '/cbica/home/gastouna/Scripts/SVN-TexturePipeline-branches-0.1/build_dir_test', 'saveIntermediate', true, 'winsz', 63, 'slidingdist', 63, 'numbin', 128, 'offset', 11, 'radius_edge', 5, 'radius_lbp', 1);
hsieh42 commented 5 years ago

That I have no idea. I never could run it interactively in MATLAB R2014B like you just did. It must have something to do with how the libraries was linked and setup when inside a MATLAB interpreter. See this thread by Yifan. I had to do Texture_compile.m to get an executable for the computeTextureFeature to actually run the itk exe.

gastouna commented 5 years ago

I was finally able to build the binaries and run the pipeline. Needed to submit it as a job, while loading matlab/R2014B as part of the script.

Do we need to build the binaries separately for each project at this point?