Closed hsieh42 closed 6 years ago
Michael, Could you please add a demo of what you have kindly shown in the meeting, how to get start with converting the process (in the DICOM anonymization)? I already have "dicom_manipulation-master/anonymization", and want to continue using the toolbox. Thank you
A note book is in the repo. Please see
Thanks! Really helpful.
when you do run some_code.py
you need to make sure that the code is either in the path or that you are in the directory where some_code.py
is. To run codes in dicom_manipulation-master/anonymization
you need to navigate into that directory. In cell 35, it shows that you are in dicom_manipulation-master
therefore you can only run read_dicom_header.py
or sortdicom.py
but not codes in dicom_manipulation-master/anonymization
.
Thanks for the help!
I have given the address properly but
"
cd ".....\Codes\dicom_manipulation-master\anonymization"
run remove_dicom_fields.py -h
"
and again received this message:
File "
Multiple dots in a relative path are invalid. A valid way to go up one level is two dots followed by a slash.
Yes, I did not use it with dots. I used it as mentioned below: cd "C:\Users\YousefiB\Documents\Codes\dicom_manipulation-master\anonymization"
but received an error:
File "
- Data collection
- DICOM sort and conversion to nifti
- How to read RECIST report from MINT
- itk-snap segmentation
- PyRadiomics
- Analyses using jupyter-notebook
- Survival analysis
Please find the analyses and slides in https://github.com/hsieh42/ctDNA. Closing the issue as we have discussed the whole project on 9/26/2018. Please create new issue should you encounter any.