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hsinnan75 / GSAlign

GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison
MIT License
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Document options #11

Open gitter-bioinf opened 3 years ago

gitter-bioinf commented 3 years ago

Dear GSAlign, Please could you provide a longer description of what the program options actually do? e.g. What changes when using one on one aligment mode. What is a use case?

hsinnan75 commented 3 years ago

If I remember correctly, the option ("one on one") forces the query sequence is only allowed to be aligned at most one position. Thank you for your suggestion. I've added this comment on the description.