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hsinnan75 / MapCaller

MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes
MIT License
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Incorrect definition of VCF header #43

Closed motthy closed 4 years ago

motthy commented 4 years ago

Hi, hsinnan75,

I used MapCaller 0.9.9.23. Running bcftools, this error message showed. [W::vcf_parse] INFO 'NTFREQ' is not defined in the header, assuming Type=String

I think that you need to change the VCF header, ##FORMAT=<ID=NTFREQ,Number=4,Type=Integer,Description="base depth"> to ##INFO=<ID=NTFREQ,Number=4,Type=Integer,Description="base depth">

Thank you.

hsinnan75 commented 4 years ago

Thank you, motthy. I've fixed the problem and updated MapCaller. Thank you!!

motthy commented 4 years ago

Thank you for your quick response!!