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hsinnan75 / MapCaller

MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes
MIT License
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Typos in information field and header #45

Closed qhelleu closed 4 years ago

qhelleu commented 4 years ago

Hi,

Three lines in the info field are open with a bracket but not closed. It looks like vcf-merge doesn't like that!

INFO=<ID=END,Number=1,Type=Integer,Description="Last position(inclusive) of the reported block"

FILTER=<ID=DUP,Description="Duplicated regions(>=50bp)."

FILTER=<ID=Gaps,Description="Region without any read alignment(>=50bp)."

Also in the header the sample is indicated as 'unkonwn' instead of 'unknown'. Alternatively it would be nice to have an option to indicate the sample name directly to MapCaller.

Thanks, Best.

hsinnan75 commented 4 years ago

Hi, thanks for the information. I've fixed the typos and updated MapCaller to v0.9.9.25. Thank you very much!

tseemann commented 4 years ago

@qhelleu can you close this issue now? brew has been upgraded.