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hsinnan75 / MapCaller

MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes
MIT License
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Report average read length in statistics? #46

Closed tseemann closed 4 years ago

tseemann commented 4 years ago

Could you include Average read length = XXX in the output statistics? And also Number of unmapped reads = XXX ?

All the 902688 paired-end reads have been processed in 6 seconds.
      813152 ( 90.08%) reads are mapped properly.
      680974 ( 75.43%) reads are mapped in pairs.
        Estimated AvgCoverage = 45
        Duplication rate=10.38%
        Estimated fragment size = 452, insert size = -144
Identify all variants (min_alt_allele_depth=5)...
hsinnan75 commented 4 years ago

Okay, I'll put these information in the output message.

hsinnan75 commented 4 years ago

The average read length now is shown in statistics.

tseemann commented 4 years ago

Awesome!