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hsinnan75 / MapCaller

MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes
MIT License
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Put bwt_index into MapCaller -idx ? #47

Closed tseemann closed 4 years ago

tseemann commented 4 years ago

I think it would be good to have the reference index inside MapCaller like minimap2 does. eg.

% Mapcaller -index reference.fasta prefix
hsinnan75 commented 4 years ago

It sounds like a great idea. I'll try to make it happen.

hsinnan75 commented 4 years ago

Hi, I've updated MapCaller to v0.9.9.27. Now MapCaller can build a reference index via % MapCaller index ref.fa prefix

tseemann commented 4 years ago

Oh, that's great !