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hsinnan75 / MapCaller

MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes
MIT License
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Can you move to htslib 1.11 ? #65

Closed tseemann closed 3 years ago

tseemann commented 3 years ago

COuld you move to newer htslib? Or is it not important. You bundle 1.5

hsinnan75 commented 3 years ago

I modified some functions in htslib and MapCaller would use those modified functions. If I move to newer htslib, I have to modify them again whenever there are newer version. If it is okay, I'd like to stay the current version. It's been a while and I kind of forget what I have modified in htslib.

tseemann commented 3 years ago

"and I kind of forget what I have modified in htslib."

I understand this problem well :-)

Recent htslib is much faster and 100s of bugs fixed.