huangkang1987 / polygene

A versatile software to perform many population genetics analyses for polyploids
GNU General Public License v3.0
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negative values from Ne estimation #3

Open stuartwillis opened 2 years ago

stuartwillis commented 2 years ago

What are the explanations for negative values for linkage/Waples Ne estimates? Why they are negative except for the total population?

        Waples 2010             

Pop Ploidy #ind L r^2_Delta Ne SE(Ne) 95% CI Bonneville 4.000 489 300 0.001 -282.713 5.522 -293.536~-271.890 Columbia_below_Bonneville 4.000 432 300 0.001 -250.303 5.055 -260.211~-240.395 John_Day 4.000 599 300 0.001 -405.267 16.479 -437.566~-372.968 middle_Snake 4.000 82 300 0.005 -44.928 1.273 -47.424~-42.432 Priest_Rapids_Wells_Tailrace 4.000 26 300 0.016 -11.424 0.315 -12.041~-10.806 Sacramento_San_Joaquin 4.000 37 300 0.011 -17.941 0.509 -18.939~-16.944 Kootenai_River 4.000 46 300 0.008 -21.771 0.643 -23.032~-20.510 The_Dalles 4.000 498 300 0.001 -295.868 7.076 -309.737~-281.999 Fraser_River 4.000 42 300 0.012 -23.790 1.062 -25.871~-21.709 Lake_Roosevelt 4.000 183 300 0.003 -110.983 3.380 -117.608~-104.358 Ice_Harbor 4.000 100 300 0.004 -54.561 1.300 -57.109~-52.014 Little_Goose 4.000 106 300 0.004 -59.761 1.783 -63.256~-56.266 Lower_Monumental 4.000 124 300 0.003 -68.405 1.601 -71.544~-65.267 upper_Snake 4.000 169 300 0.002 -93.627 2.351 -98.234~-89.019 McNary 4.000 125 300 0.003 -70.185 1.697 -73.510~-66.859 Willamette 4.000 13 300 0.030 -3.967 0.166 -4.293~-3.642 Total 4.000 3071 300 0.003 125.352 17.099 91.838~158.867