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huangnengCSU / compleasm

A genome completeness evaluation tool based on miniprot
Apache License 2.0
176 stars 17 forks source link

Error - download submodule #20

Closed rlibouba closed 7 months ago

rlibouba commented 9 months ago

Hello,

I have a problem when I want to use the download submodule.

I have installed the latest version. Here is the error I got:

md5 hash is incorrect: 8f6c62320cd30f8017af530cbb099536 while 8f6c62320cd30f8017af530cbb099536 file_versions.tsv expected deleting corrupted file mb_downloads/file_versions.tsv Unable to download necessary files Traceback (most recent call last): File "/home/rlibouba/.conda/envs/mamba/envs/comp/bin/compleasm", line 10, in <module> sys.exit(main()) File "/home/rlibouba/.conda/envs/mamba/envs/comp/lib/python3.7/site-packages/compleasm.py", line 2711, in main args.func(args) File "/home/rlibouba/.conda/envs/mamba/envs/comp/lib/python3.7/site-packages/compleasm.py", line 2473, in download downloader = Downloader(args.library_path) File "/home/rlibouba/.conda/envs/mamba/envs/comp/lib/python3.7/site-packages/compleasm.py", line 85, in __init__ self.lineage_description, self.placement_description = self.download_file_version_document() File "/home/rlibouba/.conda/envs/mamba/envs/comp/lib/python3.7/site-packages/compleasm.py", line 138, in download_file_version_document expected_file_version_hash) File "/home/rlibouba/.conda/envs/mamba/envs/comp/lib/python3.7/site-packages/compleasm.py", line 105, in download_single_file raise Error("Unable to download necessary files") compleasm.Error: Unable to download necessary files

Do you have any idea what the problem is? Thank you for your help. Have a nice day!

huangnengCSU commented 9 months ago

Hi, May I ask which lineage would you like to download?

rlibouba commented 9 months ago

I tested with mollusca, eukaryota and primates. I got the same error. Yesterday, I had no trouble downloading them.

huangnengCSU commented 9 months ago

Some BUSCO file formats have changed. I have solved the problem. But currently you have to clone the repo and run it again. Before downloading, remember to delete the destination folder to store the downloaded lineage files. (default is mb_downloads). I will update bioconda later.

Pav-mis commented 9 months ago

Hi,

I see that the comment has been closed, and you've created a new release. I was wondering if this release will be available on dockerhub? The current version of the container does not work.

huangnengCSU commented 9 months ago

Hi @Pav-mis,

I have just updated the dockerhub huangnengcsu/compleasm:v0.2.5