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huangnengCSU / compleasm

A genome completeness evaluation tool based on miniprot
Apache License 2.0
172 stars 16 forks source link

Feature request: BUSCO-formatted output #24

Open schorlton opened 6 months ago

schorlton commented 6 months ago

Thanks for the awesome tool!

This is more a feature request - if the goal is to have a better/faster version of BUSCO, it would be helpful if the outputs were also direct drop ins. For example, it would be nice if the short_summary.* files of BUSCO could be replicated as close as possible, because then they could be inputted to MultiQC. Alternatively, we could/should just build a MultiQC module for compleasm (cc @ewels).

Thanks again!

arslan9732 commented 4 months ago

Hi @schorlton I already created an issue in MultiQC repo for this. I also provided a small Python script to summarize the multiple Compleasm results like multiqc do. You can check it here: https://github.com/MultiQC/MultiQC/issues/2271