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huangnengCSU / compleasm

A genome completeness evaluation tool based on miniprot
Apache License 2.0
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Different duplicated genes of compleasm and BUSCO #33

Open shehongbing opened 6 months ago

shehongbing commented 6 months ago

Hi, That's a good tool. I used the tool and BUSCO to value my gene models. However, the results is slightly different, especially duplicated genes.

BUSCO results：

BUSCO was run in mode: proteins

    C:97.9%[S:95.4%,D:2.5%],F:0.5%,M:1.6%,n:1614

    1579    Complete BUSCOs (C)
    1539    Complete and single-copy BUSCOs (S)
    40      Complete and duplicated BUSCOs (D)
    8       Fragmented BUSCOs (F)
    27      Missing BUSCOs (M)
    1614    Total BUSCO groups searched

compleasm result:

lineage: embryophyta_odb10

S:90.02%, 1453 D:7.62%, 123 F:0.93%, 15 M:1.43%, 23 N:1614

Do you have any suggestions?

Best, Hongbing