Clumping ieu-a-299, 124 variants, using EUR population reference
PLINK v1.90b6.10 64-bit (17 Jun 2019) www.cog-genomics.org/plink/1.9/
(C) 2005-2019 Shaun Purcell, Christopher Chang GNU General Public License v3
Logging to C:\Users\xxx\AppData\Local\Temp\RtmpAjFInd\filed64500435da.log.
Options in effect:
--bfile D:/Program Files/R/GWAS��������/����LD�����ļ�/EUR/1kg.v3/EUR
--clump C:\Users\xxx\AppData\Local\Temp\RtmpAjFInd\filed64500435da
--clump-kb 10000
--clump-p1 1
--clump-r2 0.01
--out C:\Users\xxx\AppData\Local\Temp\RtmpAjFInd\filed64500435da
15556 MB RAM detected; reserving 7778 MB for main workspace.
Error: Failed to open D:/Program
Files/R/GWAS/LD/EUR/1kg.v3/EUR.bed.
Error occurred:cannot open the connection
Error in res[[i]] : subscript out of bounds
In addition: Warning message:
In file(file, "rt") :
cannot open file 'C:\Users\xxx\AppData\Local\Temp\RtmpAjFInd\filed64500435da.clumped': No such file or directory
huangyebao
commented
1 year ago
本地clump时出现如下报错：
Clumping ieu-a-299, 124 variants, using EUR population reference
PLINK v1.90b6.10 64-bit (17 Jun 2019) www.cog-genomics.org/plink/1.9/ (C) 2005-2019 Shaun Purcell, Christopher Chang GNU General Public License v3 Logging to C:\Users\xxx\AppData\Local\Temp\RtmpAjFInd\filed64500435da.log. Options in effect: --bfile D:/Program Files/R/GWAS��������/����LD�����ļ�/EUR/1kg.v3/EUR --clump C:\Users\xxx\AppData\Local\Temp\RtmpAjFInd\filed64500435da --clump-kb 10000 --clump-p1 1 --clump-r2 0.01 --out C:\Users\xxx\AppData\Local\Temp\RtmpAjFInd\filed64500435da
15556 MB RAM detected; reserving 7778 MB for main workspace. Error: Failed to open D:/Program Files/R/GWAS/LD/EUR/1kg.v3/EUR.bed. Error occurred:cannot open the connection Error in res[[i]] : subscript out of bounds In addition: Warning message: In file(file, "rt") : cannot open file 'C:\Users\xxx\AppData\Local\Temp\RtmpAjFInd\filed64500435da.clumped': No such file or directory
请问如何解决呢？谢谢