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hubmapconsortium
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airflow-dev
Configuration, workflows, and DAGs for the development instance of Airflow on HIVE infrastructure
MIT License
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CWL docker containers can't mount paths with ':'
#33
mccalluc
opened
4 years ago
1
Prototype airflow DAGs for handoff from salmon-rnaseq to hda5_to_arrow postprocessing
#32
pdblood
closed
4 years ago
0
Integrate CWL post-processing of salmon-rnaseq pipeline hda5_to_arrow into airflow-dev
#31
pdblood
closed
4 years ago
0
Deploy Airflow with postrgres database directly on AWS dev system: ingest-pipeline.dev.hubmapconsortium.org
#30
pdblood
closed
4 years ago
0
Feature/slurm jobs executor
#29
julianx
closed
2 years ago
3
make dag for arrow cwl
#27
mccalluc
closed
4 years ago
1
Add to salmon DAG
#26
mccalluc
closed
4 years ago
3
Mccalluc/first airflow test
#25
mccalluc
closed
4 years ago
0
Hardcoded file references in cwl_to_dag.py
#24
mccalluc
closed
4 years ago
1
Mccalluc/lint
#23
mccalluc
closed
4 years ago
2
What's up with dockstore_to_singularity2.py?
#22
mccalluc
closed
4 years ago
1
Lint the DAGs
#21
mccalluc
opened
4 years ago
1
h5ad-to-arrow in CWL
#20
mccalluc
closed
4 years ago
0
Document workflow submission process
#19
mccalluc
opened
4 years ago
0
Enhance Airflow DAG for remote job submission to Bridges
#12
pdblood
closed
4 years ago
0
Handoff of ingested data to CMU CWL Airflow DAG
#11
pdblood
closed
4 years ago
0
Enhance CWL Airflow DAG to POST derived dataset to Ingest API
#8
pdblood
closed
4 years ago
0
salmon_rnaseq.py: fix attempted import from `utils.py`
#7
mruffalo
closed
4 years ago
0
Fix pipeline cloning (hopefully)
#6
mruffalo
closed
4 years ago
0
Add Salmon RNA-seq quantification pipeline DAG
#5
mruffalo
closed
4 years ago
0
Ignore .idea (PyCharm project directory)
#4
mruffalo
closed
4 years ago
0
Make this repo public
#3
mccalluc
closed
3 years ago
1
Wrap in CWL in for airflow-dev
#28
mccalluc
closed
4 years ago
1
Mccalluc/add readme
#2
mccalluc
closed
4 years ago
2
Mccalluc/trivial example
#1
mccalluc
closed
4 years ago
2
Enable secure developer Docker access on HuBMAP infrastructure
#13
pdblood
closed
4 years ago
0
Create TEST instance of Airflow on HuBMAP infrastructure
#16
pdblood
closed
3 years ago
0
Test CWL workflow using Airflow with sample data
#18
pdblood
closed
3 years ago
0