hubmapconsortium airflow-dev issues

hubmapconsortium / airflow-dev

Configuration, workflows, and DAGs for the development instance of Airflow on HIVE infrastructure

MIT License

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CWL docker containers can't mount paths with ':'

#33 mccalluc opened 4 years ago
1
Prototype airflow DAGs for handoff from salmon-rnaseq to hda5_to_arrow postprocessing

#32 pdblood closed 4 years ago
0
Integrate CWL post-processing of salmon-rnaseq pipeline hda5_to_arrow into airflow-dev

#31 pdblood closed 4 years ago
0
Deploy Airflow with postrgres database directly on AWS dev system: ingest-pipeline.dev.hubmapconsortium.org

#30 pdblood closed 4 years ago
0
Feature/slurm jobs executor

#29 julianx closed 2 years ago
3
make dag for arrow cwl

#27 mccalluc closed 4 years ago
1
Add to salmon DAG

#26 mccalluc closed 4 years ago
3
Mccalluc/first airflow test

#25 mccalluc closed 4 years ago
0
Hardcoded file references in cwl_to_dag.py

#24 mccalluc closed 4 years ago
1
Mccalluc/lint

#23 mccalluc closed 4 years ago
2
What's up with dockstore_to_singularity2.py?

#22 mccalluc closed 4 years ago
1
Lint the DAGs

#21 mccalluc opened 4 years ago
1
h5ad-to-arrow in CWL

#20 mccalluc closed 4 years ago
0
Document workflow submission process

#19 mccalluc opened 4 years ago
0
Enhance Airflow DAG for remote job submission to Bridges

#12 pdblood closed 4 years ago
0
Handoff of ingested data to CMU CWL Airflow DAG

#11 pdblood closed 4 years ago
0
Enhance CWL Airflow DAG to POST derived dataset to Ingest API

#8 pdblood closed 4 years ago
0
salmon_rnaseq.py: fix attempted import from `utils.py`

#7 mruffalo closed 4 years ago
0
Fix pipeline cloning (hopefully)

#6 mruffalo closed 4 years ago
0
Add Salmon RNA-seq quantification pipeline DAG

#5 mruffalo closed 4 years ago
0
Ignore .idea (PyCharm project directory)

#4 mruffalo closed 4 years ago
0
Make this repo public

#3 mccalluc closed 3 years ago
1
Wrap in CWL in for airflow-dev

#28 mccalluc closed 4 years ago
1
Mccalluc/add readme

#2 mccalluc closed 4 years ago
2
Mccalluc/trivial example

#1 mccalluc closed 4 years ago
2
Enable secure developer Docker access on HuBMAP infrastructure

#13 pdblood closed 4 years ago
0
Create TEST instance of Airflow on HuBMAP infrastructure

#16 pdblood closed 3 years ago
0
Test CWL workflow using Airflow with sample data

#18 pdblood closed 3 years ago
0